Analysis of interatomic Contacts of Structural Units in PDB entry:
6DVS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6DVS entry

There is 1 chain in PDB entry 6DVS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 2PRO 445
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 6DVS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
2 11Right-handed alpha
Helix 2
AA2
A
11 23Right-handed alpha
Helix 3
AA3
A
75 88Right-handed alpha
Helix 4
AA4
A
96 110Right-handed alpha
Helix 5
AA5
A
121 138Right-handed alpha
Helix 6
AA6
A
187 199Right-handed alpha
Helix 7
AA7
A
212 216Right-handed alpha
Helix 8
AA8
A
220 234Right-handed alpha
Helix 9
AA9
A
252 259Right-handed alpha
Helix 10
AB1
A
270 273Right-handed 310
Helix 11
AB2
A
283 288Right-handed alpha
Helix 12
AB3
A
289 291Right-handed 310
Helix 13
AB4
A
307 324Right-handed alpha
Helix 14
AB5
A
325 349Right-handed alpha
Helix 15
AB6
A
374 379Right-handed alpha
Helix 16
AB7
A
386 400Right-handed alpha
Helix 17
AB8
A
417 438Right-handed alpha
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There are 3 sheets in PDB entry 6DVS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
43 47first strand
Strand 2
A
50 53anti-parallel
Strand 3
A
58 61anti-parallel
Strand 4
A
402 403parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
115 119first strand
Strand 2
A
278 282anti-parallel
Strand 3
A
264 268anti-parallel
Strand 4
A
237 241parallel
Strand 5
A
202 207parallel
Strand 6
A
141 145parallel
Strand 7
A
180 183parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
352 355first strand
Strand 2
A
360 365anti-parallel
Strand 3
A
409 411anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il