Analysis of interatomic Contacts of Structural Units in PDB entry:
6DVV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6DVV entry

There are 2 chains in PDB entry 6DVV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MSE 1HIS 440
B
 MSE 1HIS 440
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 40 helices in PDB entry 6DVV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
15 25Right-handed alpha
Helix 2
AA2
A
41 60Right-handed alpha
Helix 3
AA3
A
70 76Right-handed alpha
Helix 4
AA4
A
88 102Right-handed alpha
Helix 5
AA5
A
112 137Right-handed alpha
Helix 6
AA6
A
148 160Right-handed alpha
Helix 7
AA7
A
170 184Right-handed alpha
Helix 8
AA8
A
187 189Right-handed 310
Helix 9
AA9
A
215 227Right-handed alpha
Helix 10
AB1
A
239 253Right-handed alpha
Helix 11
AB2
A
264 269Right-handed alpha
Helix 12
AB3
A
269 276Right-handed alpha
Helix 13
AB4
A
282 290Right-handed alpha
Helix 14
AB5
A
290 306Right-handed alpha
Helix 15
AB6
A
307 311Right-handed 310
Helix 16
AB7
A
317 319Right-handed 310
Helix 17
AB8
A
320 332Right-handed alpha
Helix 18
AB9
A
376 400Right-handed alpha
Helix 19
AC1
A
401 412Right-handed alpha
Helix 20
AC2
A
417 432Right-handed alpha
Helix 21
AC3
B
15 25Right-handed alpha
Helix 22
AC4
B
41 60Right-handed alpha
Helix 23
AC5
B
70 76Right-handed alpha
Helix 24
AC6
B
88 99Right-handed alpha
Helix 25
AC7
B
100 104Right-handed 310
Helix 26
AC8
B
111 137Right-handed alpha
Helix 27
AC9
B
148 160Right-handed alpha
Helix 28
AD1
B
170 184Right-handed alpha
Helix 29
AD2
B
187 189Right-handed 310
Helix 30
AD3
B
215 227Right-handed alpha
Helix 31
AD4
B
243 253Right-handed alpha
Helix 32
AD5
B
264 269Right-handed alpha
Helix 33
AD6
B
269 276Right-handed alpha
Helix 34
AD7
B
282 290Right-handed alpha
Helix 35
AD8
B
290 306Right-handed alpha
Helix 36
AD9
B
317 319Right-handed 310
Helix 37
AE1
B
320 331Right-handed alpha
Helix 38
AE2
B
376 400Right-handed alpha
Helix 39
AE3
B
401 412Right-handed alpha
Helix 40
AE4
B
417 432Right-handed alpha
Back to top of page

There are 6 sheets in PDB entry 6DVV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
64 68first strand
Strand 2
A
32 38parallel
Strand 3
A
4 9parallel
Strand 4
A
80 83parallel
Strand 5
A
141 144parallel
Strand 6
A
165 167parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
191 198first strand
Strand 2
A
201 209anti-parallel
Strand 3
A
259 260anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
335 342first strand
Strand 2
A
355 363anti-parallel
Strand 3
A
366 369anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
64 68first strand
Strand 2
B
32 38parallel
Strand 3
B
4 9parallel
Strand 4
B
80 83parallel
Strand 5
B
141 144parallel
Strand 6
B
165 167parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
191 198first strand
Strand 2
B
201 209anti-parallel
Strand 3
B
259 260anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
335 342first strand
Strand 2
B
355 363anti-parallel
Strand 3
B
366 369anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il