Analysis of interatomic Contacts of Structural Units in PDB entry:
6DVW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6DVW entry

There are 4 chains in PDB entry 6DVW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 115ARG 758
B
 LYS 115ARG 758
C
 LYS 115ARG 758
D
 LYS 115ARG 758
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are132 helices in PDB entry 6DVW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
117 130Right-handed alpha
Helix 2
AA2
A
131 149Right-handed alpha
Helix 3
AA3
A
154 162Right-handed alpha
Helix 4
AA4
A
170 178Right-handed alpha
Helix 5
AA5
A
182 196Right-handed alpha
Helix 6
AA6
A
199 205Right-handed alpha
Helix 7
AA7
A
210 214Right-handed 310
Helix 8
AA8
A
219 225Right-handed alpha
Helix 9
AA9
A
227 237Right-handed alpha
Helix 10
AB1
A
247 251Right-handed 310
Helix 11
AB2
A
264 272Right-handed alpha
Helix 12
AB3
A
274 284Right-handed alpha
Helix 13
AB4
A
298 305Right-handed alpha
Helix 14
AB5
A
316 328Right-handed alpha
Helix 15
AB6
A
343 351Right-handed alpha
Helix 16
AB7
A
353 363Right-handed alpha
Helix 17
AB8
A
370 374Right-handed 310
Helix 18
AB9
A
402 410Right-handed alpha
Helix 19
AC1
A
422 436Right-handed alpha
Helix 20
AC2
A
436 457Right-handed alpha
Helix 21
AC3
A
480 501Right-handed alpha
Helix 22
AC4
A
502 508Right-handed alpha
Helix 23
AC5
A
510 515Right-handed alpha
Helix 24
AC6
A
521 543Right-handed alpha
Helix 25
AC7
A
546 561Right-handed alpha
Helix 26
AC8
A
562 567Right-handed 310
Helix 27
AC9
A
569 586Right-handed alpha
Helix 28
AD1
A
586 607Right-handed alpha
Helix 29
AD2
A
607 612Right-handed alpha
Helix 30
AD3
A
623 638Right-handed alpha
Helix 31
AD4
A
652 656Right-handed 310
Helix 32
AD5
A
658 676Right-handed alpha
Helix 33
AD6
A
683 705Right-handed alpha
Helix 34
AD7
B
117 130Right-handed alpha
Helix 35
AD8
B
131 149Right-handed alpha
Helix 36
AD9
B
154 162Right-handed alpha
Helix 37
AE1
B
170 178Right-handed alpha
Helix 38
AE2
B
182 196Right-handed alpha
Helix 39
AE3
B
199 205Right-handed alpha
Helix 40
AE4
B
210 214Right-handed 310
Helix 41
AE5
B
219 225Right-handed alpha
Helix 42
AE6
B
227 237Right-handed alpha
Helix 43
AE7
B
247 251Right-handed 310
Helix 44
AE8
B
264 272Right-handed alpha
Helix 45
AE9
B
274 284Right-handed alpha
Helix 46
AF1
B
298 305Right-handed alpha
Helix 47
AF2
B
316 328Right-handed alpha
Helix 48
AF3
B
343 351Right-handed alpha
Helix 49
AF4
B
353 363Right-handed alpha
Helix 50
AF5
B
370 374Right-handed 310
Helix 51
AF6
B
402 410Right-handed alpha
Helix 52
AF7
B
422 436Right-handed alpha
Helix 53
AF8
B
436 457Right-handed alpha
Helix 54
AF9
B
480 501Right-handed alpha
Helix 55
AG1
B
502 508Right-handed alpha
Helix 56
AG2
B
510 515Right-handed alpha
Helix 57
AG3
B
521 543Right-handed alpha
Helix 58
AG4
B
546 561Right-handed alpha
Helix 59
AG5
B
562 567Right-handed 310
Helix 60
AG6
B
569 586Right-handed alpha
Helix 61
AG7
B
586 607Right-handed alpha
Helix 62
AG8
B
607 612Right-handed alpha
Helix 63
AG9
B
623 638Right-handed alpha
Helix 64
AH1
B
652 656Right-handed 310
Helix 65
AH2
B
658 676Right-handed alpha
Helix 66
AH3
B
683 705Right-handed alpha
Helix 67
AH4
C
117 130Right-handed alpha
Helix 68
AH5
C
131 149Right-handed alpha
Helix 69
AH6
C
154 162Right-handed alpha
Helix 70
AH7
C
170 178Right-handed alpha
Helix 71
AH8
C
182 196Right-handed alpha
Helix 72
AH9
C
199 205Right-handed alpha
Helix 73
AI1
C
210 214Right-handed 310
Helix 74
AI2
C
219 225Right-handed alpha
Helix 75
AI3
C
227 237Right-handed alpha
Helix 76
AI4
C
247 251Right-handed 310
Helix 77
AI5
C
264 272Right-handed alpha
Helix 78
AI6
C
274 284Right-handed alpha
Helix 79
AI7
C
298 305Right-handed alpha
Helix 80
AI8
C
316 328Right-handed alpha
Helix 81
AI9
C
343 351Right-handed alpha
Helix 82
AJ1
C
353 363Right-handed alpha
Helix 83
AJ2
C
370 374Right-handed 310
Helix 84
AJ3
C
402 410Right-handed alpha
Helix 85
AJ4
C
422 436Right-handed alpha
Helix 86
AJ5
C
436 457Right-handed alpha
Helix 87
AJ6
C
480 501Right-handed alpha
Helix 88
AJ7
C
502 508Right-handed alpha
Helix 89
AJ8
C
510 515Right-handed alpha
Helix 90
AJ9
C
521 543Right-handed alpha
Helix 91
AK1
C
546 561Right-handed alpha
Helix 92
AK2
C
562 567Right-handed 310
Helix 93
AK3
C
569 586Right-handed alpha
Helix 94
AK4
C
586 607Right-handed alpha
Helix 95
AK5
C
607 612Right-handed alpha
Helix 96
AK6
C
623 638Right-handed alpha
Helix 97
AK7
C
652 656Right-handed 310
Helix 98
AK8
C
658 676Right-handed alpha
Helix 99
AK9
C
683 705Right-handed alpha
Helix 100
AL1
D
117 130Right-handed alpha
Helix 101
AL2
D
131 149Right-handed alpha
Helix 102
AL3
D
154 162Right-handed alpha
Helix 103
AL4
D
170 178Right-handed alpha
Helix 104
AL5
D
182 196Right-handed alpha
Helix 105
AL6
D
199 205Right-handed alpha
Helix 106
AL7
D
210 214Right-handed 310
Helix 107
AL8
D
219 225Right-handed alpha
Helix 108
AL9
D
227 237Right-handed alpha
Helix 109
AM1
D
247 251Right-handed 310
Helix 110
AM2
D
264 272Right-handed alpha
Helix 111
AM3
D
274 284Right-handed alpha
Helix 112
AM4
D
298 305Right-handed alpha
Helix 113
AM5
D
316 328Right-handed alpha
Helix 114
AM6
D
343 351Right-handed alpha
Helix 115
AM7
D
353 363Right-handed alpha
Helix 116
AM8
D
370 374Right-handed 310
Helix 117
AM9
D
402 410Right-handed alpha
Helix 118
AN1
D
422 436Right-handed alpha
Helix 119
AN2
D
436 457Right-handed alpha
Helix 120
AN3
D
480 501Right-handed alpha
Helix 121
AN4
D
502 508Right-handed alpha
Helix 122
AN5
D
510 515Right-handed alpha
Helix 123
AN6
D
521 543Right-handed alpha
Helix 124
AN7
D
546 561Right-handed alpha
Helix 125
AN8
D
562 567Right-handed 310
Helix 126
AN9
D
569 586Right-handed alpha
Helix 127
AO1
D
586 607Right-handed alpha
Helix 128
AO2
D
607 612Right-handed alpha
Helix 129
AO3
D
623 638Right-handed alpha
Helix 130
AO4
D
652 656Right-handed 310
Helix 131
AO5
D
658 676Right-handed alpha
Helix 132
AO6
D
683 705Right-handed alpha
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There are 4 sheets in PDB entry 6DVW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
376 378first strand
Strand 2
A
387 390anti-parallel
Strand 3
A
735 736anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
376 378first strand
Strand 2
B
387 390anti-parallel
Strand 3
B
735 736anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
376 378first strand
Strand 2
C
387 390anti-parallel
Strand 3
C
735 736anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
376 378first strand
Strand 2
D
387 390anti-parallel
Strand 3
D
735 736anti-parallel
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