Analysis of interatomic Contacts of Structural Units in PDB entry:
6DVY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6DVY entry

There are 4 chains in PDB entry 6DVY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 115PRO 755
B
 LYS 115PRO 755
C
 LYS 115PRO 755
D
 LYS 115PRO 755
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are120 helices in PDB entry 6DVY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
119 130Right-handed alpha
Helix 2
AA2
A
132 148Right-handed alpha
Helix 3
AA3
A
154 162Right-handed alpha
Helix 4
AA4
A
170 178Right-handed alpha
Helix 5
AA5
A
182 197Right-handed alpha
Helix 6
AA6
A
199 205Right-handed alpha
Helix 7
AA7
A
210 214Right-handed 310
Helix 8
AA8
A
217 225Right-handed alpha
Helix 9
AA9
A
227 237Right-handed alpha
Helix 10
AB1
A
264 272Right-handed alpha
Helix 11
AB2
A
274 282Right-handed alpha
Helix 12
AB3
A
298 305Right-handed alpha
Helix 13
AB4
A
315 328Right-handed alpha
Helix 14
AB5
A
343 351Right-handed alpha
Helix 15
AB6
A
353 363Right-handed alpha
Helix 16
AB7
A
370 374Right-handed 310
Helix 17
AB8
A
402 408Right-handed alpha
Helix 18
AB9
A
416 421Right-handed alpha
Helix 19
AC1
A
422 436Right-handed alpha
Helix 20
AC2
A
436 460Right-handed alpha
Helix 21
AC3
A
484 508Right-handed alpha
Helix 22
AC4
A
510 515Right-handed alpha
Helix 23
AC5
A
520 541Right-handed alpha
Helix 24
AC6
A
548 561Right-handed alpha
Helix 25
AC7
A
562 567Right-handed 310
Helix 26
AC8
A
571 585Right-handed alpha
Helix 27
AC9
A
586 606Right-handed alpha
Helix 28
AD1
A
623 634Right-handed alpha
Helix 29
AD2
A
650 677Right-handed alpha
Helix 30
AD3
A
682 707Right-handed alpha
Helix 31
AD4
B
119 130Right-handed alpha
Helix 32
AD5
B
132 148Right-handed alpha
Helix 33
AD6
B
154 162Right-handed alpha
Helix 34
AD7
B
170 178Right-handed alpha
Helix 35
AD8
B
182 197Right-handed alpha
Helix 36
AD9
B
199 205Right-handed alpha
Helix 37
AE1
B
210 214Right-handed 310
Helix 38
AE2
B
217 225Right-handed alpha
Helix 39
AE3
B
227 237Right-handed alpha
Helix 40
AE4
B
264 272Right-handed alpha
Helix 41
AE5
B
274 282Right-handed alpha
Helix 42
AE6
B
298 305Right-handed alpha
Helix 43
AE7
B
315 328Right-handed alpha
Helix 44
AE8
B
343 351Right-handed alpha
Helix 45
AE9
B
353 363Right-handed alpha
Helix 46
AF1
B
370 374Right-handed 310
Helix 47
AF2
B
402 408Right-handed alpha
Helix 48
AF3
B
416 421Right-handed alpha
Helix 49
AF4
B
422 436Right-handed alpha
Helix 50
AF5
B
436 460Right-handed alpha
Helix 51
AF6
B
484 508Right-handed alpha
Helix 52
AF7
B
510 515Right-handed alpha
Helix 53
AF8
B
520 541Right-handed alpha
Helix 54
AF9
B
548 561Right-handed alpha
Helix 55
AG1
B
562 567Right-handed 310
Helix 56
AG2
B
571 585Right-handed alpha
Helix 57
AG3
B
586 606Right-handed alpha
Helix 58
AG4
B
623 634Right-handed alpha
Helix 59
AG5
B
650 677Right-handed alpha
Helix 60
AG6
B
682 707Right-handed alpha
Helix 61
AG7
C
119 130Right-handed alpha
Helix 62
AG8
C
132 148Right-handed alpha
Helix 63
AG9
C
154 162Right-handed alpha
Helix 64
AH1
C
170 178Right-handed alpha
Helix 65
AH2
C
182 197Right-handed alpha
Helix 66
AH3
C
199 205Right-handed alpha
Helix 67
AH4
C
210 214Right-handed 310
Helix 68
AH5
C
217 225Right-handed alpha
Helix 69
AH6
C
227 237Right-handed alpha
Helix 70
AH7
C
264 272Right-handed alpha
Helix 71
AH8
C
274 282Right-handed alpha
Helix 72
AH9
C
298 305Right-handed alpha
Helix 73
AI1
C
315 328Right-handed alpha
Helix 74
AI2
C
343 351Right-handed alpha
Helix 75
AI3
C
353 363Right-handed alpha
Helix 76
AI4
C
370 374Right-handed 310
Helix 77
AI5
C
402 408Right-handed alpha
Helix 78
AI6
C
416 421Right-handed alpha
Helix 79
AI7
C
422 436Right-handed alpha
Helix 80
AI8
C
436 460Right-handed alpha
Helix 81
AI9
C
484 508Right-handed alpha
Helix 82
AJ1
C
510 515Right-handed alpha
Helix 83
AJ2
C
520 541Right-handed alpha
Helix 84
AJ3
C
548 561Right-handed alpha
Helix 85
AJ4
C
562 567Right-handed 310
Helix 86
AJ5
C
571 585Right-handed alpha
Helix 87
AJ6
C
586 606Right-handed alpha
Helix 88
AJ7
C
623 634Right-handed alpha
Helix 89
AJ8
C
650 677Right-handed alpha
Helix 90
AJ9
C
682 707Right-handed alpha
Helix 91
AK1
D
119 130Right-handed alpha
Helix 92
AK2
D
132 148Right-handed alpha
Helix 93
AK3
D
154 162Right-handed alpha
Helix 94
AK4
D
170 178Right-handed alpha
Helix 95
AK5
D
182 197Right-handed alpha
Helix 96
AK6
D
199 205Right-handed alpha
Helix 97
AK7
D
210 214Right-handed 310
Helix 98
AK8
D
217 225Right-handed alpha
Helix 99
AK9
D
227 237Right-handed alpha
Helix 100
AL1
D
264 272Right-handed alpha
Helix 101
AL2
D
274 282Right-handed alpha
Helix 102
AL3
D
298 305Right-handed alpha
Helix 103
AL4
D
315 328Right-handed alpha
Helix 104
AL5
D
343 351Right-handed alpha
Helix 105
AL6
D
353 363Right-handed alpha
Helix 106
AL7
D
370 374Right-handed 310
Helix 107
AL8
D
402 408Right-handed alpha
Helix 108
AL9
D
416 421Right-handed alpha
Helix 109
AM1
D
422 436Right-handed alpha
Helix 110
AM2
D
436 460Right-handed alpha
Helix 111
AM3
D
484 508Right-handed alpha
Helix 112
AM4
D
510 515Right-handed alpha
Helix 113
AM5
D
520 541Right-handed alpha
Helix 114
AM6
D
548 561Right-handed alpha
Helix 115
AM7
D
562 567Right-handed 310
Helix 116
AM8
D
571 585Right-handed alpha
Helix 117
AM9
D
586 606Right-handed alpha
Helix 118
AN1
D
623 634Right-handed alpha
Helix 119
AN2
D
650 677Right-handed alpha
Helix 120
AN3
D
682 707Right-handed alpha
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There are 4 sheets in PDB entry 6DVY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
376 382first strand
Strand 2
A
385 390anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
376 382first strand
Strand 2
B
385 390anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
376 382first strand
Strand 2
C
385 390anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
376 382first strand
Strand 2
D
385 390anti-parallel
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