Analysis of interatomic Contacts of Structural Units in PDB entry:
6DVZ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6DVZ entry

There are 4 chains in PDB entry 6DVZ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 115ARG 760
B
 LYS 115ARG 760
C
 LYS 115ARG 760
D
 LYS 115ARG 760
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are132 helices in PDB entry 6DVZ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
120 130Right-handed alpha
Helix 2
AA2
A
131 146Right-handed alpha
Helix 3
AA3
A
153 163Right-handed alpha
Helix 4
AA4
A
170 178Right-handed alpha
Helix 5
AA5
A
182 196Right-handed alpha
Helix 6
AA6
A
199 205Right-handed alpha
Helix 7
AA7
A
219 225Right-handed alpha
Helix 8
AA8
A
228 237Right-handed alpha
Helix 9
AA9
A
264 272Right-handed alpha
Helix 10
AB1
A
274 284Right-handed alpha
Helix 11
AB2
A
298 305Right-handed alpha
Helix 12
AB3
A
315 329Right-handed alpha
Helix 13
AB4
A
331 335Right-handed 310
Helix 14
AB5
A
343 351Right-handed alpha
Helix 15
AB6
A
353 362Right-handed alpha
Helix 16
AB7
A
367 371Right-handed 310
Helix 17
AB8
A
402 409Right-handed alpha
Helix 18
AB9
A
424 436Right-handed alpha
Helix 19
AC1
A
436 461Right-handed alpha
Helix 20
AC2
A
480 501Right-handed alpha
Helix 21
AC3
A
502 507Right-handed alpha
Helix 22
AC4
A
515 520Right-handed alpha
Helix 23
AC5
A
523 543Right-handed alpha
Helix 24
AC6
A
551 561Right-handed alpha
Helix 25
AC7
A
562 566Right-handed 310
Helix 26
AC8
A
569 574Right-handed alpha
Helix 27
AC9
A
574 582Right-handed alpha
Helix 28
AD1
A
585 607Right-handed alpha
Helix 29
AD2
A
624 634Right-handed alpha
Helix 30
AD3
A
656 666Right-handed alpha
Helix 31
AD4
A
670 686Right-handed alpha
Helix 32
AD5
A
690 706Right-handed alpha
Helix 33
AD6
A
711 715Right-handed 310
Helix 34
AD7
B
120 130Right-handed alpha
Helix 35
AD8
B
131 146Right-handed alpha
Helix 36
AD9
B
153 163Right-handed alpha
Helix 37
AE1
B
170 178Right-handed alpha
Helix 38
AE2
B
182 196Right-handed alpha
Helix 39
AE3
B
199 205Right-handed alpha
Helix 40
AE4
B
219 225Right-handed alpha
Helix 41
AE5
B
228 237Right-handed alpha
Helix 42
AE6
B
264 272Right-handed alpha
Helix 43
AE7
B
274 284Right-handed alpha
Helix 44
AE8
B
298 305Right-handed alpha
Helix 45
AE9
B
315 329Right-handed alpha
Helix 46
AF1
B
331 335Right-handed 310
Helix 47
AF2
B
343 351Right-handed alpha
Helix 48
AF3
B
353 362Right-handed alpha
Helix 49
AF4
B
367 371Right-handed 310
Helix 50
AF5
B
402 409Right-handed alpha
Helix 51
AF6
B
424 436Right-handed alpha
Helix 52
AF7
B
436 461Right-handed alpha
Helix 53
AF8
B
480 501Right-handed alpha
Helix 54
AF9
B
502 507Right-handed alpha
Helix 55
AG1
B
515 520Right-handed alpha
Helix 56
AG2
B
523 543Right-handed alpha
Helix 57
AG3
B
551 561Right-handed alpha
Helix 58
AG4
B
562 566Right-handed 310
Helix 59
AG5
B
569 574Right-handed alpha
Helix 60
AG6
B
574 582Right-handed alpha
Helix 61
AG7
B
585 607Right-handed alpha
Helix 62
AG8
B
624 634Right-handed alpha
Helix 63
AG9
B
656 666Right-handed alpha
Helix 64
AH1
B
670 686Right-handed alpha
Helix 65
AH2
B
690 706Right-handed alpha
Helix 66
AH3
B
711 715Right-handed 310
Helix 67
AH4
C
120 130Right-handed alpha
Helix 68
AH5
C
131 146Right-handed alpha
Helix 69
AH6
C
153 163Right-handed alpha
Helix 70
AH7
C
170 178Right-handed alpha
Helix 71
AH8
C
182 196Right-handed alpha
Helix 72
AH9
C
199 205Right-handed alpha
Helix 73
AI1
C
219 225Right-handed alpha
Helix 74
AI2
C
228 237Right-handed alpha
Helix 75
AI3
C
264 272Right-handed alpha
Helix 76
AI4
C
274 284Right-handed alpha
Helix 77
AI5
C
298 305Right-handed alpha
Helix 78
AI6
C
315 329Right-handed alpha
Helix 79
AI7
C
331 335Right-handed 310
Helix 80
AI8
C
343 351Right-handed alpha
Helix 81
AI9
C
353 362Right-handed alpha
Helix 82
AJ1
C
367 371Right-handed 310
Helix 83
AJ2
C
402 409Right-handed alpha
Helix 84
AJ3
C
424 436Right-handed alpha
Helix 85
AJ4
C
436 461Right-handed alpha
Helix 86
AJ5
C
480 501Right-handed alpha
Helix 87
AJ6
C
502 507Right-handed alpha
Helix 88
AJ7
C
515 520Right-handed alpha
Helix 89
AJ8
C
523 543Right-handed alpha
Helix 90
AJ9
C
551 561Right-handed alpha
Helix 91
AK1
C
562 566Right-handed 310
Helix 92
AK2
C
569 574Right-handed alpha
Helix 93
AK3
C
574 582Right-handed alpha
Helix 94
AK4
C
585 607Right-handed alpha
Helix 95
AK5
C
624 634Right-handed alpha
Helix 96
AK6
C
656 666Right-handed alpha
Helix 97
AK7
C
670 686Right-handed alpha
Helix 98
AK8
C
690 706Right-handed alpha
Helix 99
AK9
C
711 715Right-handed 310
Helix 100
AL1
D
120 130Right-handed alpha
Helix 101
AL2
D
131 146Right-handed alpha
Helix 102
AL3
D
153 163Right-handed alpha
Helix 103
AL4
D
170 178Right-handed alpha
Helix 104
AL5
D
182 196Right-handed alpha
Helix 105
AL6
D
199 205Right-handed alpha
Helix 106
AL7
D
219 225Right-handed alpha
Helix 107
AL8
D
228 237Right-handed alpha
Helix 108
AL9
D
264 272Right-handed alpha
Helix 109
AM1
D
274 284Right-handed alpha
Helix 110
AM2
D
298 305Right-handed alpha
Helix 111
AM3
D
315 329Right-handed alpha
Helix 112
AM4
D
331 335Right-handed 310
Helix 113
AM5
D
343 351Right-handed alpha
Helix 114
AM6
D
353 362Right-handed alpha
Helix 115
AM7
D
367 371Right-handed 310
Helix 116
AM8
D
402 409Right-handed alpha
Helix 117
AM9
D
424 436Right-handed alpha
Helix 118
AN1
D
436 461Right-handed alpha
Helix 119
AN2
D
480 501Right-handed alpha
Helix 120
AN3
D
502 507Right-handed alpha
Helix 121
AN4
D
515 520Right-handed alpha
Helix 122
AN5
D
523 543Right-handed alpha
Helix 123
AN6
D
551 561Right-handed alpha
Helix 124
AN7
D
562 566Right-handed 310
Helix 125
AN8
D
569 574Right-handed alpha
Helix 126
AN9
D
574 582Right-handed alpha
Helix 127
AO1
D
585 607Right-handed alpha
Helix 128
AO2
D
624 634Right-handed alpha
Helix 129
AO3
D
656 666Right-handed alpha
Helix 130
AO4
D
670 686Right-handed alpha
Helix 131
AO5
D
690 706Right-handed alpha
Helix 132
AO6
D
711 715Right-handed 310
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There are 4 sheets in PDB entry 6DVZ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
381 382first strand
Strand 2
A
385 386anti-parallel
Strand 3
A
735 736anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
381 382first strand
Strand 2
B
385 386anti-parallel
Strand 3
B
735 736anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
381 382first strand
Strand 2
C
385 386anti-parallel
Strand 3
C
735 736anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
381 382first strand
Strand 2
D
385 386anti-parallel
Strand 3
D
735 736anti-parallel
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