Analysis of interatomic Contacts of Structural Units in PDB entry:
6DW1

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6DW1 entry

There are 5 chains in PDB entry 6DW1 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
D	GLY 25	ARG 232
C	THR 12	LYS 221
A	THR 12	LYS 221
E	SER 10	ASN 217
B	ASN 8	ASN 217

There are 16 helices in PDB entry 6DW1. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	D	25	33	Right-handed alpha
Helix 2	AA2	D	85	88	Right-handed 310
Helix 3	AA3	C	13	19	Right-handed alpha
Helix 4	AA4	C	89	93	Right-handed 310
Helix 5	AA5	C	173	177	Right-handed 310
Helix 6	AA6	A	13	23	Right-handed alpha
Helix 7	AA7	A	72	75	Right-handed 310
Helix 8	AA8	A	86	91	Right-handed alpha
Helix 9	AA9	A	141	145	Right-handed 310
Helix 10	AB1	E	11	20	Right-handed alpha
Helix 11	AB2	E	70	73	Right-handed 310
Helix 12	AB3	E	84	88	Right-handed 310
Helix 13	AB4	E	170	173	Right-handed 310
Helix 14	AB5	B	9	21	Right-handed alpha
Helix 15	AB6	B	84	88	Right-handed 310
Helix 16	AB7	B	177	181	Right-handed 310

There are 21 sheets in PDB entry 6DW1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	95	98	first strand
Strand 2	D	129	134	anti-parallel
Strand 3	D	138	150	anti-parallel
Strand 4	D	71	83	anti-parallel
Strand 5	D	52	65	anti-parallel
Strand 6	D	180	183	parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	120	121	first strand
Strand 2	D	138	150	anti-parallel
Strand 3	D	71	83	anti-parallel
Strand 4	D	52	65	anti-parallel
Strand 5	D	190	191	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	112	113	first strand
Strand 2	D	169	170	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	166	167	first strand
Strand 2	D	225	228	anti-parallel
Strand 3	D	205	208	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	211	214	first strand
Strand 2	D	219	222	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	107	108	first strand
Strand 2	C	130	137	anti-parallel
Strand 3	C	58	68	anti-parallel
Strand 4	C	38	49	anti-parallel
Strand 5	C	166	170	parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	107	108	first strand
Strand 2	C	130	137	anti-parallel
Strand 3	C	58	68	anti-parallel
Strand 4	C	38	49	anti-parallel
Strand 5	C	179	180	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	82	85	first strand
Strand 2	C	118	121	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	99	100	first strand
Strand 2	C	149	157	anti-parallel
Strand 3	C	208	220	anti-parallel
Strand 4	C	190	198	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	99	100	first strand
Strand 2	C	149	157	anti-parallel
Strand 3	C	208	220	anti-parallel
Strand 4	C	201	203	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	46	53	first strand
Strand 2	A	58	70	anti-parallel
Strand 3	A	125	131	anti-parallel
Strand 4	A	116	120	anti-parallel
Strand 5	A	83	85	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	46	53	first strand
Strand 2	A	58	70	anti-parallel
Strand 3	A	38	43	anti-parallel
Strand 4	A	166	170	parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	98	100	first strand
Strand 2	A	156	158	anti-parallel
Strand 3	A	208	220	anti-parallel
Strand 4	A	149	153	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	98	100	first strand
Strand 2	A	156	158	anti-parallel
Strand 3	A	208	220	anti-parallel
Strand 4	A	190	203	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	103	106	first strand
Strand 2	A	134	136	anti-parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	82	83	first strand
Strand 2	E	114	117	anti-parallel
Strand 3	E	123	135	anti-parallel
Strand 4	E	56	68	anti-parallel
Strand 5	E	36	46	anti-parallel
Strand 6	E	164	168	parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	101	106	first strand
Strand 2	E	123	135	anti-parallel
Strand 3	E	56	68	anti-parallel
Strand 4	E	36	46	anti-parallel
Strand 5	E	175	176	parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	96	98	first strand
Strand 2	E	153	156	anti-parallel
Strand 3	E	204	214	anti-parallel
Strand 4	E	188	199	anti-parallel

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There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	82	83	first strand
Strand 2	B	114	117	anti-parallel
Strand 3	B	123	135	anti-parallel
Strand 4	B	56	68	anti-parallel
Strand 5	B	36	47	anti-parallel
Strand 6	B	164	168	parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	101	106	first strand
Strand 2	B	123	135	anti-parallel
Strand 3	B	56	68	anti-parallel
Strand 4	B	36	47	anti-parallel
Strand 5	B	175	176	parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	96	98	first strand
Strand 2	B	150	156	anti-parallel
Strand 3	B	204	213	anti-parallel
Strand 4	B	190	199	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6DW1

Analysis of interatomic Contacts of Structural Units in PDB entry:
6DW1