Analysis of interatomic Contacts of Structural Units in PDB entry:
6DWE

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6DWE entry

There are 5 chains in PDB entry 6DWE (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 8	GLY 267
B	ILE 5	GLY 408
G	ALA 9	GLY 267
H	ALA 4	LEU 407
E	ALA 9	CYS 53

There are129 helices in PDB entry 6DWE. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	12	22	Right-handed alpha
Helix 2	AA2	A	37	51	Right-handed alpha
Helix 3	AA3	A	69	82	Right-handed alpha
Helix 4	AA4	A	85	99	Right-handed alpha
Helix 5	AA5	A	108	116	Right-handed alpha
Helix 6	AA6	A	116	127	Right-handed alpha
Helix 7	AA7	A	138	141	Right-handed 310
Helix 8	AA8	A	142	153	Right-handed alpha
Helix 9	AA9	A	165	176	Right-handed alpha
Helix 10	AB1	A	197	208	Right-handed alpha
Helix 11	AB2	A	222	231	Right-handed alpha
Helix 12	AB3	A	239	249	Right-handed alpha
Helix 13	AB4	A	249	264	Right-handed alpha
Helix 14	AB5	B	31	33	Right-handed 310
Helix 15	AB6	B	34	49	Right-handed alpha
Helix 16	AB7	B	51	65	Right-handed alpha
Helix 17	AB8	B	76	83	Right-handed 310
Helix 18	AB9	B	93	99	Right-handed 310
Helix 19	AC1	B	100	115	Right-handed alpha
Helix 20	AC2	B	127	141	Right-handed alpha
Helix 21	AC3	B	150	156	Right-handed alpha
Helix 22	AC4	B	156	166	Right-handed alpha
Helix 23	AC5	B	179	194	Right-handed alpha
Helix 24	AC6	B	210	235	Right-handed alpha
Helix 25	AC7	B	248	256	Right-handed alpha
Helix 26	AC8	B	257	259	Right-handed 310
Helix 27	AC9	B	283	288	Right-handed alpha
Helix 28	AD1	B	324	333	Right-handed alpha
Helix 29	AD2	B	343	358	Right-handed alpha
Helix 30	AD3	B	362	380	Right-handed alpha
Helix 31	AD4	B	393	395	Right-handed 310
Helix 32	AD5	B	396	404	Right-handed alpha
Helix 33	AD6	G	12	22	Right-handed alpha
Helix 34	AD7	G	37	52	Right-handed alpha
Helix 35	AD8	G	69	82	Right-handed alpha
Helix 36	AD9	G	85	99	Right-handed alpha
Helix 37	AE1	G	108	116	Right-handed alpha
Helix 38	AE2	G	116	127	Right-handed alpha
Helix 39	AE3	G	138	141	Right-handed 310
Helix 40	AE4	G	142	152	Right-handed alpha
Helix 41	AE5	G	165	176	Right-handed alpha
Helix 42	AE6	G	197	208	Right-handed alpha
Helix 43	AE7	G	222	230	Right-handed alpha
Helix 44	AE8	G	239	249	Right-handed alpha
Helix 45	AE9	G	249	264	Right-handed alpha
Helix 46	AF1	H	31	50	Right-handed alpha
Helix 47	AF2	H	51	65	Right-handed alpha
Helix 48	AF3	H	76	82	Right-handed 310
Helix 49	AF4	H	93	99	Right-handed 310
Helix 50	AF5	H	100	115	Right-handed alpha
Helix 51	AF6	H	127	141	Right-handed alpha
Helix 52	AF7	H	150	156	Right-handed alpha
Helix 53	AF8	H	156	166	Right-handed alpha
Helix 54	AF9	H	179	194	Right-handed alpha
Helix 55	AG1	H	210	235	Right-handed alpha
Helix 56	AG2	H	248	256	Right-handed alpha
Helix 57	AG3	H	257	259	Right-handed 310
Helix 58	AG4	H	283	288	Right-handed alpha
Helix 59	AG5	H	324	333	Right-handed alpha
Helix 60	AG6	H	343	358	Right-handed alpha
Helix 61	AG7	H	362	380	Right-handed alpha
Helix 62	AG8	H	393	395	Right-handed 310
Helix 63	AG9	H	396	404	Right-handed alpha
Helix 64	AH1	E	12	21	Right-handed alpha
Helix 65	AH2	E	37	51	Right-handed alpha
Helix 66	AH3	E	69	82	Right-handed alpha
Helix 67	AH4	E	85	98	Right-handed alpha
Helix 68	AH5	E	108	116	Right-handed alpha
Helix 69	AH6	E	116	126	Right-handed alpha
Helix 70	AH7	E	138	141	Right-handed 310
Helix 71	AH8	E	142	152	Right-handed alpha
Helix 72	AH9	E	165	175	Right-handed alpha
Helix 73	AI1	E	198	208	Right-handed alpha
Helix 74	AI2	E	222	231	Right-handed alpha
Helix 75	AI3	E	239	249	Right-handed alpha
Helix 76	AI4	E	249	264	Right-handed alpha
Helix 77	AI5	F	20	24	Right-handed 310
Helix 78	AI6	F	31	33	Right-handed 310
Helix 79	AI7	F	34	49	Right-handed alpha
Helix 80	AI8	F	51	65	Right-handed alpha
Helix 81	AI9	F	76	83	Right-handed 310
Helix 82	AJ1	F	93	99	Right-handed 310
Helix 83	AJ2	F	100	115	Right-handed alpha
Helix 84	AJ3	F	127	141	Right-handed alpha
Helix 85	AJ4	F	150	156	Right-handed alpha
Helix 86	AJ5	F	156	166	Right-handed alpha
Helix 87	AJ6	F	179	195	Right-handed alpha
Helix 88	AJ7	F	210	235	Right-handed alpha
Helix 89	AJ8	F	248	256	Right-handed alpha
Helix 90	AJ9	F	257	259	Right-handed 310
Helix 91	AK1	F	283	288	Right-handed alpha
Helix 92	AK2	F	324	333	Right-handed alpha
Helix 93	AK3	F	342	358	Right-handed alpha
Helix 94	AK4	F	362	380	Right-handed alpha
Helix 95	AK5	F	396	404	Right-handed alpha
Helix 96	AK6	C	12	22	Right-handed alpha
Helix 97	AK7	C	37	51	Right-handed alpha
Helix 98	AK8	C	69	82	Right-handed alpha
Helix 99	AK9	C	85	99	Right-handed alpha
Helix 100	AL1	C	108	116	Right-handed alpha
Helix 101	AL2	C	116	127	Right-handed alpha
Helix 102	AL3	C	138	141	Right-handed 310
Helix 103	AL4	C	142	152	Right-handed alpha
Helix 104	AL5	C	165	175	Right-handed alpha
Helix 105	AL6	C	197	208	Right-handed alpha
Helix 106	AL7	C	222	231	Right-handed alpha
Helix 107	AL8	C	239	249	Right-handed alpha
Helix 108	AL9	C	249	264	Right-handed alpha
Helix 109	AM1	D	20	24	Right-handed 310
Helix 110	AM2	D	31	33	Right-handed 310
Helix 111	AM3	D	34	49	Right-handed alpha
Helix 112	AM4	D	51	65	Right-handed alpha
Helix 113	AM5	D	76	82	Right-handed 310
Helix 114	AM6	D	93	99	Right-handed 310
Helix 115	AM7	D	100	115	Right-handed alpha
Helix 116	AM8	D	127	141	Right-handed alpha
Helix 117	AM9	D	150	156	Right-handed alpha
Helix 118	AN1	D	156	166	Right-handed alpha
Helix 119	AN2	D	179	194	Right-handed alpha
Helix 120	AN3	D	210	235	Right-handed alpha
Helix 121	AN4	D	248	256	Right-handed alpha
Helix 122	AN5	D	257	259	Right-handed 310
Helix 123	AN6	D	275	279	Right-handed 310
Helix 124	AN7	D	283	288	Right-handed alpha
Helix 125	AN8	D	324	333	Right-handed alpha
Helix 126	AN9	D	342	358	Right-handed alpha
Helix 127	AO1	D	362	380	Right-handed alpha
Helix 128	AO2	D	393	395	Right-handed 310
Helix 129	AO3	D	396	404	Right-handed alpha

There are 16 sheets in PDB entry 6DWE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	155	157	first strand
Strand 2	A	131	133	parallel
Strand 3	A	103	106	parallel
Strand 4	A	55	59	parallel
Strand 5	A	26	32	parallel
Strand 6	A	235	238	parallel
Strand 7	A	214	217	parallel
Strand 8	A	180	183	parallel
Strand 9	A	159	160	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	18	19	first strand
Strand 2	B	25	29	anti-parallel
Strand 3	B	295	300	anti-parallel
Strand 4	B	289	293	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	72	74	first strand
Strand 2	B	86	91	anti-parallel
Strand 3	B	384	389	parallel
Strand 4	B	240	245	parallel
Strand 5	B	265	273	parallel
Strand 6	B	337	342	parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	169	173	first strand
Strand 2	B	143	149	parallel
Strand 3	B	119	124	parallel
Strand 4	B	198	200	parallel

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There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	155	157	first strand
Strand 2	G	131	133	parallel
Strand 3	G	102	106	parallel
Strand 4	G	55	59	parallel
Strand 5	G	26	32	parallel
Strand 6	G	235	238	parallel
Strand 7	G	214	217	parallel
Strand 8	G	180	182	parallel
Strand 9	G	159	160	parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	18	19	first strand
Strand 2	H	25	29	anti-parallel
Strand 3	H	295	300	anti-parallel
Strand 4	H	289	293	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	72	74	first strand
Strand 2	H	86	91	anti-parallel
Strand 3	H	384	389	parallel
Strand 4	H	240	244	parallel
Strand 5	H	265	273	parallel
Strand 6	H	336	342	parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	169	173	first strand
Strand 2	H	143	149	parallel
Strand 3	H	119	124	parallel
Strand 4	H	198	200	parallel

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There are 9 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	155	157	first strand
Strand 2	E	131	133	parallel
Strand 3	E	103	106	parallel
Strand 4	E	55	59	parallel
Strand 5	E	26	32	parallel
Strand 6	E	235	238	parallel
Strand 7	E	214	217	parallel
Strand 8	E	180	183	parallel
Strand 9	E	159	160	parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	18	19	first strand
Strand 2	F	25	29	anti-parallel
Strand 3	F	295	300	anti-parallel
Strand 4	F	289	293	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	72	74	first strand
Strand 2	F	86	91	anti-parallel
Strand 3	F	384	389	parallel
Strand 4	F	240	244	parallel
Strand 5	F	265	271	parallel
Strand 6	F	336	341	parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	169	173	first strand
Strand 2	F	143	149	parallel
Strand 3	F	119	124	parallel
Strand 4	F	198	200	parallel

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There are 9 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	155	157	first strand
Strand 2	C	131	133	parallel
Strand 3	C	103	106	parallel
Strand 4	C	55	59	parallel
Strand 5	C	26	32	parallel
Strand 6	C	235	238	parallel
Strand 7	C	214	217	parallel
Strand 8	C	180	183	parallel
Strand 9	C	159	160	parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	18	19	first strand
Strand 2	D	25	29	anti-parallel
Strand 3	D	295	300	anti-parallel
Strand 4	D	289	293	anti-parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	72	74	first strand
Strand 2	D	86	91	anti-parallel
Strand 3	D	384	389	parallel
Strand 4	D	240	244	parallel
Strand 5	D	265	271	parallel
Strand 6	D	336	341	parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	169	173	first strand
Strand 2	D	143	149	parallel
Strand 3	D	119	124	parallel
Strand 4	D	198	200	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6DWE

Analysis of interatomic Contacts of Structural Units in PDB entry:
6DWE