Analysis of interatomic Contacts of Structural Units in PDB entry:
6DWF

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6DWF entry

There are 7 chains in PDB entry 6DWF (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ILE 16	ASN 245
G	SER 1	THR 163
B	ILE 16	ASN 245
C	ILE 16	ASN 245
D	ILE 16	ASN 245
E	ILE 16	ASN 245
F	ILE 16	TYR 94

There are 18 helices in PDB entry 6DWF. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	55	59	Right-handed 310
Helix 2	AA2	A	164	172	Right-handed alpha
Helix 3	AA3	A	234	245	Right-handed alpha
Helix 4	AA4	B	55	59	Right-handed 310
Helix 5	AA5	B	164	172	Right-handed alpha
Helix 6	AA6	B	234	245	Right-handed alpha
Helix 7	AA7	C	55	59	Right-handed 310
Helix 8	AA8	C	164	172	Right-handed alpha
Helix 9	AA9	C	234	245	Right-handed alpha
Helix 10	AB1	D	55	59	Right-handed 310
Helix 11	AB2	D	164	172	Right-handed alpha
Helix 12	AB3	D	234	245	Right-handed alpha
Helix 13	AB4	E	55	59	Right-handed 310
Helix 14	AB5	E	164	172	Right-handed alpha
Helix 15	AB6	E	234	245	Right-handed alpha
Helix 16	AB7	F	55	59	Right-handed 310
Helix 17	AB8	F	164	172	Right-handed alpha
Helix 18	AB9	F	234	245	Right-handed alpha

There are 36 sheets in PDB entry 6DWF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	20	21	first strand
Strand 2	A	156	161	anti-parallel
Strand 3	A	135	140	anti-parallel
Strand 4	A	198	201	anti-parallel
Strand 5	A	204	215	anti-parallel
Strand 6	A	226	230	anti-parallel
Strand 7	A	180	183	anti-parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	30	34	first strand
Strand 2	A	40	48	anti-parallel
Strand 3	A	51	54	anti-parallel
Strand 4	A	104	108	anti-parallel
Strand 5	A	81	90	anti-parallel
Strand 6	A	64	67	anti-parallel
Strand 7	A	30	34	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	19	23	first strand
Strand 2	G	157	161	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	30	34	first strand
Strand 2	G	44	48	anti-parallel
Strand 3	G	144	149	anti-parallel
Strand 4	G	134	141	anti-parallel
Strand 5	G	120	125	anti-parallel
Strand 6	G	112	117	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	57	60	first strand
Strand 2	G	75	78	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	87	93	first strand
Strand 2	G	97	103	anti-parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	20	21	first strand
Strand 2	B	156	161	anti-parallel
Strand 3	B	135	140	anti-parallel
Strand 4	B	198	201	anti-parallel
Strand 5	B	204	215	anti-parallel
Strand 6	B	226	230	anti-parallel
Strand 7	B	180	183	anti-parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	30	34	first strand
Strand 2	B	40	48	anti-parallel
Strand 3	B	51	54	anti-parallel
Strand 4	B	104	108	anti-parallel
Strand 5	B	81	90	anti-parallel
Strand 6	B	64	67	anti-parallel
Strand 7	B	30	34	anti-parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	20	21	first strand
Strand 2	C	156	161	anti-parallel
Strand 3	C	135	140	anti-parallel
Strand 4	C	198	201	anti-parallel
Strand 5	C	204	215	anti-parallel
Strand 6	C	226	230	anti-parallel
Strand 7	C	180	183	anti-parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	30	34	first strand
Strand 2	C	40	48	anti-parallel
Strand 3	C	51	54	anti-parallel
Strand 4	C	104	108	anti-parallel
Strand 5	C	81	90	anti-parallel
Strand 6	C	64	67	anti-parallel
Strand 7	C	30	34	anti-parallel

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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	20	21	first strand
Strand 2	D	156	161	anti-parallel
Strand 3	D	135	140	anti-parallel
Strand 4	D	198	201	anti-parallel
Strand 5	D	204	215	anti-parallel
Strand 6	D	226	230	anti-parallel
Strand 7	D	180	183	anti-parallel

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There are 7 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	30	34	first strand
Strand 2	D	40	48	anti-parallel
Strand 3	D	51	54	anti-parallel
Strand 4	D	104	108	anti-parallel
Strand 5	D	81	90	anti-parallel
Strand 6	D	64	67	anti-parallel
Strand 7	D	30	34	anti-parallel

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There are 7 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	20	21	first strand
Strand 2	E	156	161	anti-parallel
Strand 3	E	135	140	anti-parallel
Strand 4	E	198	201	anti-parallel
Strand 5	E	204	215	anti-parallel
Strand 6	E	226	230	anti-parallel
Strand 7	E	180	183	anti-parallel

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There are 7 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	30	34	first strand
Strand 2	E	40	48	anti-parallel
Strand 3	E	51	54	anti-parallel
Strand 4	E	104	108	anti-parallel
Strand 5	E	81	90	anti-parallel
Strand 6	E	64	67	anti-parallel
Strand 7	E	30	34	anti-parallel

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There are 7 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	20	21	first strand
Strand 2	F	156	161	anti-parallel
Strand 3	F	135	140	anti-parallel
Strand 4	F	198	201	anti-parallel
Strand 5	F	204	215	anti-parallel
Strand 6	F	226	230	anti-parallel
Strand 7	F	180	183	anti-parallel

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There are 7 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	30	34	first strand
Strand 2	F	40	48	anti-parallel
Strand 3	F	51	54	anti-parallel
Strand 4	F	104	108	anti-parallel
Strand 5	F	81	90	anti-parallel
Strand 6	F	64	67	anti-parallel
Strand 7	F	30	34	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	19	23	first strand
Strand 2	H	157	161	anti-parallel

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There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	30	34	first strand
Strand 2	H	44	48	anti-parallel
Strand 3	H	144	149	anti-parallel
Strand 4	H	134	141	anti-parallel
Strand 5	H	120	125	anti-parallel
Strand 6	H	112	117	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	57	60	first strand
Strand 2	H	75	78	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	87	93	first strand
Strand 2	H	97	103	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	19	23	first strand
Strand 2	I	157	161	anti-parallel

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There are 6 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	30	34	first strand
Strand 2	I	44	48	anti-parallel
Strand 3	I	144	149	anti-parallel
Strand 4	I	134	141	anti-parallel
Strand 5	I	120	125	anti-parallel
Strand 6	I	112	117	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	57	60	first strand
Strand 2	I	75	78	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	87	93	first strand
Strand 2	I	97	103	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	19	23	first strand
Strand 2	J	157	161	anti-parallel

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There are 6 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	30	34	first strand
Strand 2	J	44	48	anti-parallel
Strand 3	J	144	149	anti-parallel
Strand 4	J	134	141	anti-parallel
Strand 5	J	120	125	anti-parallel
Strand 6	J	112	117	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	57	60	first strand
Strand 2	J	75	78	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	87	93	first strand
Strand 2	J	97	103	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	19	23	first strand
Strand 2	K	157	161	anti-parallel

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There are 6 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	30	34	first strand
Strand 2	K	44	48	anti-parallel
Strand 3	K	144	149	anti-parallel
Strand 4	K	134	141	anti-parallel
Strand 5	K	120	125	anti-parallel
Strand 6	K	112	117	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	57	60	first strand
Strand 2	K	75	78	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	87	93	first strand
Strand 2	K	97	103	anti-parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	19	23	first strand
Strand 2	L	157	161	anti-parallel

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There are 6 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	30	34	first strand
Strand 2	L	44	48	anti-parallel
Strand 3	L	144	149	anti-parallel
Strand 4	L	134	141	anti-parallel
Strand 5	L	120	125	anti-parallel
Strand 6	L	112	117	anti-parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	57	60	first strand
Strand 2	L	75	78	anti-parallel

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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	87	93	first strand
Strand 2	L	97	103	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6DWF

Analysis of interatomic Contacts of Structural Units in PDB entry:
6DWF