Analysis of interatomic Contacts of Structural Units in PDB entry:
6DWM

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6DWM entry

There are 4 chains in PDB entry 6DWM (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 35	SER 512
B	LEU 37	SER 512
C	LYS 38	SER 512
D	ASN 39	SER 512

There are100 helices in PDB entry 6DWM. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	51	56	Right-handed alpha
Helix 2	AA2	A	58	71	Right-handed alpha
Helix 3	AA3	A	88	97	Right-handed alpha
Helix 4	AA4	A	99	103	Right-handed 310
Helix 5	AA5	A	109	114	Right-handed alpha
Helix 6	AA6	A	115	119	Right-handed 310
Helix 7	AA7	A	128	147	Right-handed alpha
Helix 8	AA8	A	157	180	Right-handed alpha
Helix 9	AA9	A	185	204	Right-handed alpha
Helix 10	AB1	A	211	219	Right-handed alpha
Helix 11	AB2	A	223	229	Right-handed alpha
Helix 12	AB3	A	232	237	Right-handed alpha
Helix 13	AB4	A	238	242	Right-handed 310
Helix 14	AB5	A	245	272	Right-handed alpha
Helix 15	AB6	A	280	291	Right-handed alpha
Helix 16	AB7	A	303	309	Right-handed alpha
Helix 17	AB8	A	309	336	Right-handed alpha
Helix 18	AB9	A	336	351	Right-handed alpha
Helix 19	AC1	A	358	364	Right-handed 310
Helix 20	AC2	A	365	380	Right-handed alpha
Helix 21	AC3	A	410	416	Right-handed alpha
Helix 22	AC4	A	428	433	Right-handed 310
Helix 23	AC5	A	440	445	Right-handed alpha
Helix 24	AC6	A	452	456	Right-handed 310
Helix 25	AC7	A	459	477	Right-handed alpha
Helix 26	AC8	B	51	56	Right-handed alpha
Helix 27	AC9	B	58	71	Right-handed alpha
Helix 28	AD1	B	88	97	Right-handed alpha
Helix 29	AD2	B	99	103	Right-handed 310
Helix 30	AD3	B	109	114	Right-handed alpha
Helix 31	AD4	B	115	119	Right-handed 310
Helix 32	AD5	B	128	146	Right-handed alpha
Helix 33	AD6	B	157	180	Right-handed alpha
Helix 34	AD7	B	185	204	Right-handed alpha
Helix 35	AD8	B	211	219	Right-handed alpha
Helix 36	AD9	B	223	229	Right-handed alpha
Helix 37	AE1	B	232	237	Right-handed alpha
Helix 38	AE2	B	238	242	Right-handed 310
Helix 39	AE3	B	245	272	Right-handed alpha
Helix 40	AE4	B	280	292	Right-handed alpha
Helix 41	AE5	B	303	309	Right-handed alpha
Helix 42	AE6	B	309	336	Right-handed alpha
Helix 43	AE7	B	336	351	Right-handed alpha
Helix 44	AE8	B	358	364	Right-handed 310
Helix 45	AE9	B	365	380	Right-handed alpha
Helix 46	AF1	B	410	416	Right-handed alpha
Helix 47	AF2	B	428	433	Right-handed 310
Helix 48	AF3	B	440	445	Right-handed alpha
Helix 49	AF4	B	452	456	Right-handed 310
Helix 50	AF5	B	459	477	Right-handed alpha
Helix 51	AF6	C	51	56	Right-handed alpha
Helix 52	AF7	C	58	71	Right-handed alpha
Helix 53	AF8	C	88	97	Right-handed alpha
Helix 54	AF9	C	99	103	Right-handed 310
Helix 55	AG1	C	109	114	Right-handed alpha
Helix 56	AG2	C	115	119	Right-handed 310
Helix 57	AG3	C	128	145	Right-handed alpha
Helix 58	AG4	C	157	180	Right-handed alpha
Helix 59	AG5	C	185	204	Right-handed alpha
Helix 60	AG6	C	211	219	Right-handed alpha
Helix 61	AG7	C	223	229	Right-handed alpha
Helix 62	AG8	C	232	236	Right-handed 310
Helix 63	AG9	C	237	242	Right-handed 310
Helix 64	AH1	C	245	272	Right-handed alpha
Helix 65	AH2	C	280	291	Right-handed alpha
Helix 66	AH3	C	304	309	Right-handed alpha
Helix 67	AH4	C	309	336	Right-handed alpha
Helix 68	AH5	C	336	351	Right-handed alpha
Helix 69	AH6	C	358	364	Right-handed 310
Helix 70	AH7	C	365	380	Right-handed alpha
Helix 71	AH8	C	410	416	Right-handed alpha
Helix 72	AH9	C	428	433	Right-handed 310
Helix 73	AI1	C	440	445	Right-handed alpha
Helix 74	AI2	C	452	456	Right-handed 310
Helix 75	AI3	C	459	477	Right-handed alpha
Helix 76	AI4	D	51	56	Right-handed alpha
Helix 77	AI5	D	58	71	Right-handed alpha
Helix 78	AI6	D	88	97	Right-handed alpha
Helix 79	AI7	D	99	103	Right-handed 310
Helix 80	AI8	D	109	114	Right-handed alpha
Helix 81	AI9	D	115	119	Right-handed 310
Helix 82	AJ1	D	128	146	Right-handed alpha
Helix 83	AJ2	D	157	180	Right-handed alpha
Helix 84	AJ3	D	185	204	Right-handed alpha
Helix 85	AJ4	D	211	219	Right-handed alpha
Helix 86	AJ5	D	223	229	Right-handed alpha
Helix 87	AJ6	D	232	236	Right-handed 310
Helix 88	AJ7	D	237	242	Right-handed 310
Helix 89	AJ8	D	245	272	Right-handed alpha
Helix 90	AJ9	D	280	291	Right-handed alpha
Helix 91	AK1	D	303	309	Right-handed alpha
Helix 92	AK2	D	309	336	Right-handed alpha
Helix 93	AK3	D	336	351	Right-handed alpha
Helix 94	AK4	D	358	364	Right-handed 310
Helix 95	AK5	D	365	380	Right-handed alpha
Helix 96	AK6	D	410	416	Right-handed alpha
Helix 97	AK7	D	428	433	Right-handed 310
Helix 98	AK8	D	440	445	Right-handed alpha
Helix 99	AK9	D	452	456	Right-handed 310
Helix 100	AL1	D	459	476	Right-handed alpha

There are 12 sheets in PDB entry 6DWM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	73	78	first strand
Strand 2	A	81	86	anti-parallel
Strand 3	A	406	409	parallel
Strand 4	A	388	389	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	394	396	first strand
Strand 2	A	399	401	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	478	481	first strand
Strand 2	A	507	510	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	73	78	first strand
Strand 2	B	81	86	anti-parallel
Strand 3	B	406	409	parallel
Strand 4	B	388	389	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	394	396	first strand
Strand 2	B	399	401	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	478	481	first strand
Strand 2	B	507	510	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	73	78	first strand
Strand 2	C	81	86	anti-parallel
Strand 3	C	406	409	parallel
Strand 4	C	388	389	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	394	396	first strand
Strand 2	C	399	401	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	478	481	first strand
Strand 2	C	507	510	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	73	78	first strand
Strand 2	D	81	86	anti-parallel
Strand 3	D	406	409	parallel
Strand 4	D	388	389	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	394	396	first strand
Strand 2	D	399	401	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	478	481	first strand
Strand 2	D	507	510	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6DWM

Analysis of interatomic Contacts of Structural Units in PDB entry:
6DWM