Analysis of interatomic Contacts of Structural Units in PDB entry:
6DX0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6DX0 entry

There are 4 chains in PDB entry 6DX0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 81LYS 609
B
 A 1 G 16
C
 C 1 C 25
D
 G 1 A 7
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 6DX0. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
87 105Right-handed alpha
Helix 2
AA2
A
114 132Right-handed alpha
Helix 3
AA3
A
136 141Right-handed alpha
Helix 4
AA4
A
143 162Right-handed alpha
Helix 5
AA5
A
162 172Right-handed alpha
Helix 6
AA6
A
220 235Right-handed alpha
Helix 7
AA7
A
250 257Right-handed alpha
Helix 8
AA8
A
265 280Right-handed alpha
Helix 9
AA9
A
281 283Right-handed 310
Helix 10
AB1
A
284 301Right-handed alpha
Helix 11
AB2
A
320 331Right-handed alpha
Helix 12
AB3
A
332 344Right-handed alpha
Helix 13
AB4
A
345 349Right-handed 310
Helix 14
AB5
A
353 375Right-handed alpha
Helix 15
AB6
A
381 383Right-handed 310
Helix 16
AB7
A
384 396Right-handed alpha
Helix 17
AB8
A
403 420Right-handed alpha
Helix 18
AB9
A
421 425Right-handed 310
Helix 19
AC1
A
426 435Right-handed alpha
Helix 20
AC2
A
445 467Right-handed alpha
Helix 21
AC3
A
519 530Right-handed alpha
Helix 22
AC4
A
539 546Right-handed alpha
Helix 23
AC5
A
554 562Right-handed alpha
Helix 24
AC6
A
568 582Right-handed alpha
Helix 25
AC7
A
584 589Right-handed 310
Helix 26
AC8
A
590 607Right-handed alpha
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There is 1 sheet (AA1) in PDB entry 6DX0.

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
204 213first strand
Strand 2
A
190 199anti-parallel
Strand 3
A
175 183anti-parallel
Strand 4
A
243 247parallel
Strand 5
A
261 264parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il