Analysis of interatomic Contacts of Structural Units in PDB entry:
6DX5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6DX5 entry

There are 2 chains in PDB entry 6DX5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 GLU 2GLN 183
A
 GLU 2GLN 183
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 18 helices in PDB entry 6DX5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
21 24Right-handed 310
Helix 2
AA2
B
36 48Right-handed alpha
Helix 3
AA3
B
49 51Right-handed 310
Helix 4
AA4
B
52 67Right-handed alpha
Helix 5
AA5
B
68 70Right-handed 310
Helix 6
AA6
B
71 87Right-handed alpha
Helix 7
AA7
B
103 118Right-handed alpha
Helix 8
AA8
B
125 137Right-handed alpha
Helix 9
AA9
B
161 165Right-handed 310
Helix 10
AB1
A
21 24Right-handed 310
Helix 11
AB2
A
36 48Right-handed alpha
Helix 12
AB3
A
49 51Right-handed 310
Helix 13
AB4
A
52 67Right-handed alpha
Helix 14
AB5
A
68 70Right-handed 310
Helix 15
AB6
A
71 87Right-handed alpha
Helix 16
AB7
A
103 118Right-handed alpha
Helix 17
AB8
A
125 137Right-handed alpha
Helix 18
AB9
A
161 165Right-handed 310
Back to top of page

There are 2 sheets in PDB entry 6DX5. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
7 10first strand
Strand 2
B
13 16anti-parallel
Strand 3
B
151 157anti-parallel
Strand 4
B
140 145anti-parallel
Strand 5
B
166 171parallel
Strand 6
B
174 180anti-parallel
Strand 7
B
26 29anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
7 10first strand
Strand 2
A
13 16anti-parallel
Strand 3
A
151 157anti-parallel
Strand 4
A
140 145anti-parallel
Strand 5
A
166 171parallel
Strand 6
A
174 180anti-parallel
Strand 7
A
26 29anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il