Analysis of interatomic Contacts of Structural Units in PDB entry:
6DX8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6DX8 entry

There are 2 chains in PDB entry 6DX8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 9ILE 386
B
 SER 8GLU 279
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 33 helices in PDB entry 6DX8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
30 39Right-handed alpha
Helix 2
AA2
A
44 57Right-handed alpha
Helix 3
AA3
A
68 74Right-handed alpha
Helix 4
AA4
A
75 80Right-handed 310
Helix 5
AA5
A
85 113Right-handed alpha
Helix 6
AA6
A
115 119Right-handed 310
Helix 7
AA7
A
134 144Right-handed alpha
Helix 8
AA8
A
160 176Right-handed alpha
Helix 9
AA9
A
188 192Right-handed 310
Helix 10
AB1
A
202 210Right-handed alpha
Helix 11
AB2
A
264 289Right-handed alpha
Helix 12
AB3
A
293 297Right-handed 310
Helix 13
AB4
A
305 317Right-handed alpha
Helix 14
AB5
A
323 334Right-handed alpha
Helix 15
AB6
A
336 338Right-handed 310
Helix 16
AB7
A
339 355Right-handed alpha
Helix 17
AB8
B
30 39Right-handed alpha
Helix 18
AB9
B
44 57Right-handed alpha
Helix 19
AC1
B
68 74Right-handed alpha
Helix 20
AC2
B
75 80Right-handed 310
Helix 21
AC3
B
85 113Right-handed alpha
Helix 22
AC4
B
115 119Right-handed 310
Helix 23
AC5
B
134 144Right-handed alpha
Helix 24
AC6
B
160 176Right-handed alpha
Helix 25
AC7
B
188 192Right-handed 310
Helix 26
AC8
B
202 210Right-handed alpha
Helix 27
AC9
B
264 277Right-handed alpha
Helix 28
AD1
B
277 289Right-handed alpha
Helix 29
AD2
B
293 297Right-handed 310
Helix 30
AD3
B
305 316Right-handed alpha
Helix 31
AD4
B
323 334Right-handed alpha
Helix 32
AD5
B
336 338Right-handed 310
Helix 33
AD6
B
339 355Right-handed alpha
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There are 6 sheets in PDB entry 6DX8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
150 155first strand
Strand 2
A
121 126parallel
Strand 3
A
180 187parallel
Strand 4
A
213 220anti-parallel
Strand 5
A
12 20anti-parallel
Strand 6
A
231 240anti-parallel
Strand 7
A
377 385anti-parallel
Strand 8
A
366 373anti-parallel
Strand 9
A
298 301parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
25 27first strand
Strand 2
A
62 64anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
131 132first strand
Strand 2
B
248 253anti-parallel
Strand 3
B
256 261anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
248 253first strand
Strand 2
A
256 261anti-parallel
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There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
150 155first strand
Strand 2
B
121 126parallel
Strand 3
B
180 187parallel
Strand 4
B
213 220anti-parallel
Strand 5
B
12 20anti-parallel
Strand 6
B
231 240anti-parallel
Strand 7
B
377 385anti-parallel
Strand 8
B
366 373anti-parallel
Strand 9
B
298 301parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
25 27first strand
Strand 2
B
62 64anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il