Analysis of interatomic Contacts of Structural Units in PDB entry:
6DXE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6DXE entry

There are 4 chains in PDB entry 6DXE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 7GLY 168
A
 SER 170LEU 395
C
 SER 7GLY 168
C
 SER 170SER 256
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 40 helices in PDB entry 6DXE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
8 17Right-handed alpha
Helix 2
AA2
A
40 49Right-handed alpha
Helix 3
AA3
A
54 68Right-handed alpha
Helix 4
AA4
A
78 84Right-handed alpha
Helix 5
AA5
A
85 90Right-handed alpha
Helix 6
AA6
A
95 123Right-handed alpha
Helix 7
AA7
A
125 129Right-handed 310
Helix 8
AA8
A
144 154Right-handed alpha
Helix 9
AA9
A
170 186Right-handed alpha
Helix 10
AB1
A
198 202Right-handed 310
Helix 11
AB2
A
210 220Right-handed alpha
Helix 12
AB3
A
234 238Right-handed 310
Helix 13
AB4
A
276 294Right-handed alpha
Helix 14
AB5
A
295 297Right-handed 310
Helix 15
AB6
A
300 304Right-handed 310
Helix 16
AB7
A
312 324Right-handed alpha
Helix 17
AB8
A
326 329Right-handed 310
Helix 18
AB9
A
330 341Right-handed alpha
Helix 19
AC1
A
343 345Right-handed 310
Helix 20
AC2
A
346 363Right-handed alpha
Helix 21
AC3
C
8 17Right-handed alpha
Helix 22
AC4
C
40 49Right-handed alpha
Helix 23
AC5
C
54 68Right-handed alpha
Helix 24
AC6
C
78 85Right-handed alpha
Helix 25
AC7
C
86 89Right-handed 310
Helix 26
AC8
C
95 123Right-handed alpha
Helix 27
AC9
C
125 129Right-handed 310
Helix 28
AD1
C
144 154Right-handed alpha
Helix 29
AD2
C
170 186Right-handed alpha
Helix 30
AD3
C
198 202Right-handed 310
Helix 31
AD4
C
211 220Right-handed alpha
Helix 32
AD5
C
234 238Right-handed 310
Helix 33
AD6
C
276 294Right-handed alpha
Helix 34
AD7
C
295 297Right-handed 310
Helix 35
AD8
C
300 304Right-handed 310
Helix 36
AD9
C
312 324Right-handed alpha
Helix 37
AE1
C
326 329Right-handed 310
Helix 38
AE2
C
330 341Right-handed alpha
Helix 39
AE3
C
343 345Right-handed 310
Helix 40
AE4
C
346 363Right-handed alpha
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There are 6 sheets in PDB entry 6DXE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
160 164first strand
Strand 2
A
131 135parallel
Strand 3
A
190 197parallel
Strand 4
A
223 230anti-parallel
Strand 5
A
23 30anti-parallel
Strand 6
A
243 252anti-parallel
Strand 7
A
384 392anti-parallel
Strand 8
A
373 380anti-parallel
Strand 9
A
305 308parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
35 37first strand
Strand 2
A
72 74anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
260 265first strand
Strand 2
A
268 273anti-parallel
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There are 9 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
160 164first strand
Strand 2
C
131 135parallel
Strand 3
C
191 197parallel
Strand 4
C
223 230anti-parallel
Strand 5
C
23 30anti-parallel
Strand 6
C
243 252anti-parallel
Strand 7
C
384 392anti-parallel
Strand 8
C
373 380anti-parallel
Strand 9
C
305 308parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
35 37first strand
Strand 2
C
72 74anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
260 265first strand
Strand 2
C
268 273anti-parallel
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