Analysis of interatomic Contacts of Structural Units in PDB entry:
6DXK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6DXK entry

There are 2 chains in PDB entry 6DXK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 530GLN 776
B
 PRO 530LYS 777
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 6DXK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
531 540Right-handed alpha
Helix 2
AA2
A
555 580Right-handed alpha
Helix 3
AA3
A
588 617Right-handed alpha
Helix 4
AA4
A
636 656Right-handed alpha
Helix 5
AA5
A
659 672Right-handed alpha
Helix 6
AA6
A
682 703Right-handed alpha
Helix 7
AA7
A
707 737Right-handed alpha
Helix 8
AA8
A
749 761Right-handed alpha
Helix 9
AA9
B
531 540Right-handed alpha
Helix 10
AB1
B
555 580Right-handed alpha
Helix 11
AB2
B
588 617Right-handed alpha
Helix 12
AB3
B
636 656Right-handed alpha
Helix 13
AB4
B
659 672Right-handed alpha
Helix 14
AB5
B
682 703Right-handed alpha
Helix 15
AB6
B
707 737Right-handed alpha
Helix 16
AB7
B
749 751Right-handed 310
Helix 17
AB8
B
752 761Right-handed alpha
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There are 6 sheets in PDB entry 6DXK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
620 624first strand
Strand 2
A
627 630anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
674 676first strand
Strand 2
A
769 771anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
739 741first strand
Strand 2
A
762 764parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
620 624first strand
Strand 2
B
627 630anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
674 676first strand
Strand 2
B
769 771anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
739 741first strand
Strand 2
B
762 764parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il