Analysis of interatomic Contacts of Structural Units in PDB entry:
6DXP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6DXP entry

There are 4 chains in PDB entry 6DXP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU -4ALA 201
C
 ALA 2ALA 201
B
 PHE -2ALA 201
D
 TYR -3ALA 201
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 35 helices in PDB entry 6DXP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
-4 1Right-handed alpha
Helix 2
AA2
A
12 15Right-handed 310
Helix 3
AA3
A
16 32Right-handed alpha
Helix 4
AA4
A
44 46Right-handed 310
Helix 5
AA5
A
52 61Right-handed alpha
Helix 6
AA6
A
66 86Right-handed alpha
Helix 7
AA7
A
101 112Right-handed alpha
Helix 8
AA8
A
141 146Right-handed 310
Helix 9
AA9
A
151 163Right-handed alpha
Helix 10
AB1
A
181 198Right-handed alpha
Helix 11
AB2
C
12 15Right-handed 310
Helix 12
AB3
C
16 31Right-handed alpha
Helix 13
AB4
C
52 61Right-handed alpha
Helix 14
AB5
C
66 86Right-handed alpha
Helix 15
AB6
C
101 112Right-handed alpha
Helix 16
AB7
C
142 146Right-handed 310
Helix 17
AB8
C
151 163Right-handed alpha
Helix 18
AB9
C
181 198Right-handed alpha
Helix 19
AC1
B
12 15Right-handed 310
Helix 20
AC2
B
16 32Right-handed alpha
Helix 21
AC3
B
43 47Right-handed alpha
Helix 22
AC4
B
52 60Right-handed alpha
Helix 23
AC5
B
66 86Right-handed alpha
Helix 24
AC6
B
101 112Right-handed alpha
Helix 25
AC7
B
142 146Right-handed 310
Helix 26
AC8
B
151 163Right-handed alpha
Helix 27
AC9
B
181 198Right-handed alpha
Helix 28
AD1
D
12 15Right-handed 310
Helix 29
AD2
D
16 32Right-handed alpha
Helix 30
AD3
D
44 47Right-handed 310
Helix 31
AD4
D
52 60Right-handed alpha
Helix 32
AD5
D
66 86Right-handed alpha
Helix 33
AD6
D
101 112Right-handed alpha
Helix 34
AD7
D
151 163Right-handed alpha
Helix 35
AD8
D
181 198Right-handed alpha
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There are 8 sheets in PDB entry 6DXP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
36 42first strand
Strand 2
A
2 8parallel
Strand 3
A
88 92parallel
Strand 4
A
133 139parallel
Strand 5
A
168 173parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
118 120first strand
Strand 2
A
125 127anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
37 42first strand
Strand 2
C
3 8parallel
Strand 3
C
88 92parallel
Strand 4
C
133 139parallel
Strand 5
C
167 173parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
118 119first strand
Strand 2
C
126 127anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
36 42first strand
Strand 2
B
2 8parallel
Strand 3
B
88 92parallel
Strand 4
B
133 139parallel
Strand 5
B
168 173parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
118 119first strand
Strand 2
B
126 127anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
34 42first strand
Strand 2
D
0 8parallel
Strand 3
D
88 92parallel
Strand 4
D
133 139parallel
Strand 5
D
168 173parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
118 119first strand
Strand 2
D
126 127anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il