Analysis of interatomic Contacts of Structural Units in PDB entry:
6DXS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6DXS entry

There are 4 chains in PDB entry 6DXS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 2GLU 343
B
 MET 2GLU 343
C
 MET 2GLU 343
D
 MET 2MET 252
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 76 helices in PDB entry 6DXS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
15 31Right-handed alpha
Helix 2
AA2
A
42 53Right-handed alpha
Helix 3
AA3
A
53 62Right-handed alpha
Helix 4
AA4
A
71 76Right-handed alpha
Helix 5
AA5
A
81 103Right-handed alpha
Helix 6
AA6
A
121 134Right-handed alpha
Helix 7
AA7
A
158 160Right-handed 310
Helix 8
AA8
A
161 172Right-handed alpha
Helix 9
AA9
A
192 207Right-handed alpha
Helix 10
AB1
A
222 226Right-handed alpha
Helix 11
AB2
A
231 242Right-handed alpha
Helix 12
AB3
A
246 251Right-handed alpha
Helix 13
AB4
A
263 274Right-handed alpha
Helix 14
AB5
A
275 277Right-handed 310
Helix 15
AB6
A
302 310Right-handed alpha
Helix 16
AB7
A
313 322Right-handed alpha
Helix 17
AB8
A
322 329Right-handed alpha
Helix 18
AB9
A
329 338Right-handed alpha
Helix 19
AC1
B
17 31Right-handed alpha
Helix 20
AC2
B
42 53Right-handed alpha
Helix 21
AC3
B
53 62Right-handed alpha
Helix 22
AC4
B
72 75Right-handed 310
Helix 23
AC5
B
81 103Right-handed alpha
Helix 24
AC6
B
121 134Right-handed alpha
Helix 25
AC7
B
158 160Right-handed 310
Helix 26
AC8
B
161 172Right-handed alpha
Helix 27
AC9
B
192 207Right-handed alpha
Helix 28
AD1
B
209 214Right-handed alpha
Helix 29
AD2
B
222 226Right-handed 310
Helix 30
AD3
B
228 230Right-handed 310
Helix 31
AD4
B
231 243Right-handed alpha
Helix 32
AD5
B
246 251Right-handed alpha
Helix 33
AD6
B
263 274Right-handed alpha
Helix 34
AD7
B
275 277Right-handed 310
Helix 35
AD8
B
303 310Right-handed alpha
Helix 36
AD9
B
313 322Right-handed alpha
Helix 37
AE1
B
322 329Right-handed alpha
Helix 38
AE2
B
329 339Right-handed alpha
Helix 39
AE3
C
15 32Right-handed alpha
Helix 40
AE4
C
42 53Right-handed alpha
Helix 41
AE5
C
53 62Right-handed alpha
Helix 42
AE6
C
72 76Right-handed 310
Helix 43
AE7
C
81 103Right-handed alpha
Helix 44
AE8
C
121 136Right-handed alpha
Helix 45
AE9
C
158 160Right-handed 310
Helix 46
AF1
C
161 171Right-handed alpha
Helix 47
AF2
C
192 208Right-handed alpha
Helix 48
AF3
C
209 214Right-handed alpha
Helix 49
AF4
C
222 226Right-handed alpha
Helix 50
AF5
C
228 230Right-handed 310
Helix 51
AF6
C
231 243Right-handed alpha
Helix 52
AF7
C
246 251Right-handed alpha
Helix 53
AF8
C
263 274Right-handed alpha
Helix 54
AF9
C
275 277Right-handed 310
Helix 55
AG1
C
303 309Right-handed alpha
Helix 56
AG2
C
313 322Right-handed alpha
Helix 57
AG3
C
322 329Right-handed alpha
Helix 58
AG4
C
329 339Right-handed alpha
Helix 59
AG5
D
15 31Right-handed alpha
Helix 60
AG6
D
42 53Right-handed alpha
Helix 61
AG7
D
53 62Right-handed alpha
Helix 62
AG8
D
81 103Right-handed alpha
Helix 63
AG9
D
121 134Right-handed alpha
Helix 64
AH1
D
161 172Right-handed alpha
Helix 65
AH2
D
192 208Right-handed alpha
Helix 66
AH3
D
209 214Right-handed alpha
Helix 67
AH4
D
222 226Right-handed alpha
Helix 68
AH5
D
228 230Right-handed 310
Helix 69
AH6
D
231 243Right-handed alpha
Helix 70
AH7
D
246 251Right-handed alpha
Helix 71
AH8
D
263 274Right-handed alpha
Helix 72
AH9
D
275 277Right-handed 310
Helix 73
AI1
D
303 308Right-handed alpha
Helix 74
AI2
D
313 322Right-handed alpha
Helix 75
AI3
D
322 329Right-handed alpha
Helix 76
AI4
D
329 339Right-handed alpha
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There are 5 sheets in PDB entry 6DXS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
5 6first strand
Strand 2
A
65 70parallel
Strand 3
A
10 11parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
5 6first strand
Strand 2
A
65 70parallel
Strand 3
A
107 112parallel
Strand 4
A
139 142parallel
Strand 5
A
175 177parallel
Strand 6
A
219 221parallel
Strand 7
A
255 258parallel
Strand 8
A
279 280parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
5 11first strand
Strand 2
B
65 70parallel
Strand 3
B
107 111parallel
Strand 4
B
139 142parallel
Strand 5
B
175 177parallel
Strand 6
B
219 221parallel
Strand 7
B
255 258parallel
Strand 8
B
279 280parallel
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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
5 11first strand
Strand 2
C
65 70parallel
Strand 3
C
107 111parallel
Strand 4
C
139 142parallel
Strand 5
C
175 177parallel
Strand 6
C
219 221parallel
Strand 7
C
255 258parallel
Strand 8
C
279 280parallel
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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
5 11first strand
Strand 2
D
65 70parallel
Strand 3
D
107 111parallel
Strand 4
D
139 142parallel
Strand 5
D
175 177parallel
Strand 6
D
219 221parallel
Strand 7
D
255 258parallel
Strand 8
D
279 280parallel
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