Analysis of interatomic Contacts of Structural Units in PDB entry:
6DXY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6DXY entry

There are 4 chains in PDB entry 6DXY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 34SER 128
B
 THR 132ASN 360
C
 VAL 34SER 128
D
 THR 132THR 340
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 33 helices in PDB entry 6DXY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
53 58Right-handed alpha
Helix 2
AA2
A
61 77Right-handed alpha
Helix 3
AA3
A
78 84Right-handed alpha
Helix 4
AA4
A
84 96Right-handed alpha
Helix 5
AA5
A
97 112Right-handed alpha
Helix 6
AA6
A
114 124Right-handed alpha
Helix 7
AA7
B
156 159Right-handed 310
Helix 8
AA8
B
205 215Right-handed alpha
Helix 9
AA9
B
220 232Right-handed alpha
Helix 10
AB1
B
234 245Right-handed alpha
Helix 11
AB2
B
280 284Right-handed 310
Helix 12
AB3
B
300 304Right-handed 310
Helix 13
AB4
B
305 317Right-handed alpha
Helix 14
AB5
B
318 321Right-handed 310
Helix 15
AB6
B
322 330Right-handed alpha
Helix 16
AB7
B
350 354Right-handed 310
Helix 17
AB8
C
48 53Right-handed alpha
Helix 18
AB9
C
53 58Right-handed alpha
Helix 19
AC1
C
61 77Right-handed alpha
Helix 20
AC2
C
78 84Right-handed alpha
Helix 21
AC3
C
84 96Right-handed alpha
Helix 22
AC4
C
97 112Right-handed alpha
Helix 23
AC5
C
114 125Right-handed alpha
Helix 24
AC6
D
154 160Right-handed alpha
Helix 25
AC7
D
205 214Right-handed alpha
Helix 26
AC8
D
220 232Right-handed alpha
Helix 27
AC9
D
234 245Right-handed alpha
Helix 28
AD1
D
280 284Right-handed 310
Helix 29
AD2
D
300 304Right-handed 310
Helix 30
AD3
D
305 317Right-handed alpha
Helix 31
AD4
D
318 321Right-handed 310
Helix 32
AD5
D
322 330Right-handed alpha
Helix 33
AD6
D
350 354Right-handed 310
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There are 4 sheets in PDB entry 6DXY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
40 44first strand
Strand 2
B
161 168parallel
Strand 3
B
171 179anti-parallel
Strand 4
B
187 190anti-parallel
Strand 5
B
194 200anti-parallel
Strand 6
B
251 256anti-parallel
Strand 7
B
263 268anti-parallel
Strand 8
B
273 278anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
287 290first strand
Strand 2
B
132 137anti-parallel
Strand 3
B
143 150anti-parallel
Strand 4
B
340 346anti-parallel
Strand 5
B
355 358anti-parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
40 44first strand
Strand 2
D
161 168parallel
Strand 3
D
171 179anti-parallel
Strand 4
D
187 190anti-parallel
Strand 5
D
194 200anti-parallel
Strand 6
D
251 256anti-parallel
Strand 7
D
263 268anti-parallel
Strand 8
D
273 278anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
287 290first strand
Strand 2
D
132 137anti-parallel
Strand 3
D
143 150anti-parallel
Strand 4
D
340 346anti-parallel
Strand 5
D
355 358anti-parallel
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