Analysis of interatomic Contacts of Structural Units in PDB entry:
6DY1


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6DY1 entry

There are 2 chains in PDB entry 6DY1 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 33PHE 127
B
 CYS 128SER 359
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 6DY1. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
45 50Right-handed alpha
Helix 2
AA2
A
50 55Right-handed alpha
Helix 3
AA3
A
58 74Right-handed alpha
Helix 4
AA4
A
75 85Right-handed alpha
Helix 5
AA5
A
85 91Right-handed alpha
Helix 6
AA6
A
94 109Right-handed alpha
Helix 7
AA7
A
111 119Right-handed alpha
Helix 8
AA8
A
120 126Right-handed alpha
Helix 9
AA9
B
150 155Right-handed alpha
Helix 10
AB1
B
202 212Right-handed alpha
Helix 11
AB2
B
217 229Right-handed alpha
Helix 12
AB3
B
231 242Right-handed alpha
Helix 13
AB4
B
277 281Right-handed 310
Helix 14
AB5
B
302 314Right-handed alpha
Helix 15
AB6
B
319 327Right-handed alpha
Helix 16
AB7
B
347 351Right-handed 310
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There are 2 sheets in PDB entry 6DY1. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
37 41first strand
Strand 2
B
158 165parallel
Strand 3
B
168 176anti-parallel
Strand 4
B
184 187anti-parallel
Strand 5
B
191 197anti-parallel
Strand 6
B
248 253anti-parallel
Strand 7
B
260 265anti-parallel
Strand 8
B
270 275anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
284 287first strand
Strand 2
B
129 134anti-parallel
Strand 3
B
140 147anti-parallel
Strand 4
B
337 343anti-parallel
Strand 5
B
352 355anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il