Analysis of interatomic Contacts of Structural Units in PDB entry:
6DY2


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6DY2 entry

There are 4 chains in PDB entry 6DY2 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 28SER 121
B
 CYS 124LEU 355
C
 SER 28SER 121
D
 CYS 124LEU 355
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 31 helices in PDB entry 6DY2. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
41 45Right-handed 310
Helix 2
AA2
A
46 51Right-handed alpha
Helix 3
AA3
A
54 70Right-handed alpha
Helix 4
AA4
A
71 85Right-handed alpha
Helix 5
AA5
A
86 89Right-handed 310
Helix 6
AA6
A
92 105Right-handed alpha
Helix 7
AA7
A
107 116Right-handed alpha
Helix 8
AA8
A
116 121Right-handed alpha
Helix 9
AA9
B
146 153Right-handed alpha
Helix 10
AB1
B
200 211Right-handed alpha
Helix 11
AB2
B
214 226Right-handed alpha
Helix 12
AB3
B
228 239Right-handed alpha
Helix 13
AB4
B
274 278Right-handed 310
Helix 14
AB5
B
299 311Right-handed alpha
Helix 15
AB6
B
316 324Right-handed alpha
Helix 16
AB7
B
344 348Right-handed 310
Helix 17
AB8
C
41 45Right-handed 310
Helix 18
AB9
C
46 51Right-handed alpha
Helix 19
AC1
C
54 70Right-handed alpha
Helix 20
AC2
C
71 85Right-handed alpha
Helix 21
AC3
C
92 104Right-handed alpha
Helix 22
AC4
C
107 115Right-handed alpha
Helix 23
AC5
C
116 121Right-handed alpha
Helix 24
AC6
D
147 152Right-handed alpha
Helix 25
AC7
D
200 211Right-handed alpha
Helix 26
AC8
D
214 226Right-handed alpha
Helix 27
AC9
D
228 239Right-handed alpha
Helix 28
AD1
D
274 278Right-handed 310
Helix 29
AD2
D
299 311Right-handed alpha
Helix 30
AD3
D
316 324Right-handed alpha
Helix 31
AD4
D
344 348Right-handed 310
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There are 4 sheets in PDB entry 6DY2. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
33 37first strand
Strand 2
B
154 160parallel
Strand 3
B
165 172anti-parallel
Strand 4
B
180 183anti-parallel
Strand 5
B
187 193anti-parallel
Strand 6
B
245 250anti-parallel
Strand 7
B
257 262anti-parallel
Strand 8
B
267 272anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
281 284first strand
Strand 2
B
125 130anti-parallel
Strand 3
B
136 143anti-parallel
Strand 4
B
334 340anti-parallel
Strand 5
B
349 352anti-parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
33 37first strand
Strand 2
D
154 161parallel
Strand 3
D
164 172anti-parallel
Strand 4
D
180 183anti-parallel
Strand 5
D
187 193anti-parallel
Strand 6
D
245 250anti-parallel
Strand 7
D
257 262anti-parallel
Strand 8
D
267 272anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
281 284first strand
Strand 2
D
125 130anti-parallel
Strand 3
D
136 143anti-parallel
Strand 4
D
334 340anti-parallel
Strand 5
D
349 352anti-parallel
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