Analysis of interatomic Contacts of Structural Units in PDB entry:
6DY3

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6DY3 entry

There are 4 chains in PDB entry 6DY3 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 17	PHE 118
B	CYS 122	PRO 355
C	LYS 17	PHE 118
D	CYS 122	GLN 301

There are 75 helices in PDB entry 6DY3. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	32	36	Right-handed 310
Helix 2	AA2	A	37	45	Right-handed alpha
Helix 3	AA3	A	47	57	Right-handed alpha
Helix 4	AA4	A	58	59	Right-handed 310
Helix 5	AA5	A	60	62	Right-handed 310
Helix 6	AA6	A	63	72	Right-handed alpha
Helix 7	AA7	A	73	77	Right-handed 310
Helix 8	AA8	A	79	94	Right-handed alpha
Helix 9	AA9	A	96	106	Right-handed alpha
Helix 10	AB1	A	114	118	Right-handed 310
Helix 11	AB2	B	144	150	Right-handed alpha
Helix 12	AB3	B	196	211	Right-handed alpha
Helix 13	AB4	B	212	224	Right-handed alpha
Helix 14	AB5	B	226	235	Right-handed alpha
Helix 15	AB6	B	272	276	Right-handed 310
Helix 16	AB7	B	286	292	Right-handed alpha
Helix 17	AB8	B	293	307	Right-handed alpha
Helix 18	AB9	B	312	321	Right-handed alpha
Helix 19	AC1	B	342	348	Right-handed alpha
Helix 20	AC2	C	32	36	Right-handed 310
Helix 21	AC3	C	37	44	Right-handed alpha
Helix 22	AC4	C	47	57	Right-handed alpha
Helix 23	AC5	C	58	59	Right-handed 310
Helix 24	AC6	C	60	62	Right-handed 310
Helix 25	AC7	C	63	73	Right-handed alpha
Helix 26	AC8	C	73	78	Right-handed alpha
Helix 27	AC9	C	79	94	Right-handed alpha
Helix 28	AD1	C	96	106	Right-handed alpha
Helix 29	AD2	C	114	118	Right-handed 310
Helix 30	AD3	D	144	150	Right-handed alpha
Helix 31	AD4	D	196	211	Right-handed alpha
Helix 32	AD5	D	212	224	Right-handed alpha
Helix 33	AD6	D	226	236	Right-handed alpha
Helix 34	AD7	D	272	276	Right-handed 310
Helix 35	AD8	D	286	292	Right-handed alpha
Helix 36	AD9	D	293	307	Right-handed alpha
Helix 37	AE1	D	312	321	Right-handed alpha
Helix 38	AE2	D	342	348	Right-handed alpha
Helix 39	AE3	E	32	36	Right-handed 310
Helix 40	AE4	E	37	45	Right-handed alpha
Helix 41	AE5	E	47	57	Right-handed alpha
Helix 42	AE6	E	58	59	Right-handed 310
Helix 43	AE7	E	60	62	Right-handed 310
Helix 44	AE8	E	63	72	Right-handed alpha
Helix 45	AE9	E	73	77	Right-handed 310
Helix 46	AF1	E	79	94	Right-handed alpha
Helix 47	AF2	E	96	106	Right-handed alpha
Helix 48	AF3	E	114	118	Right-handed 310
Helix 49	AF4	F	144	150	Right-handed alpha
Helix 50	AF5	F	196	211	Right-handed alpha
Helix 51	AF6	F	212	224	Right-handed alpha
Helix 52	AF7	F	226	235	Right-handed alpha
Helix 53	AF8	F	272	276	Right-handed 310
Helix 54	AF9	F	286	292	Right-handed alpha
Helix 55	AG1	F	293	307	Right-handed alpha
Helix 56	AG2	F	312	321	Right-handed alpha
Helix 57	AG3	F	342	348	Right-handed alpha
Helix 58	AG4	G	32	36	Right-handed 310
Helix 59	AG5	G	37	45	Right-handed alpha
Helix 60	AG6	G	46	57	Right-handed alpha
Helix 61	AG7	G	58	59	Right-handed 310
Helix 62	AG8	G	60	62	Right-handed 310
Helix 63	AG9	G	63	73	Right-handed alpha
Helix 64	AH1	G	74	77	Right-handed 310
Helix 65	AH2	G	79	94	Right-handed alpha
Helix 66	AH3	G	96	106	Right-handed alpha
Helix 67	AH4	H	144	150	Right-handed alpha
Helix 68	AH5	H	197	211	Right-handed alpha
Helix 69	AH6	H	212	224	Right-handed alpha
Helix 70	AH7	H	226	235	Right-handed alpha
Helix 71	AH8	H	272	276	Right-handed 310
Helix 72	AH9	H	286	292	Right-handed alpha
Helix 73	AI1	H	293	307	Right-handed alpha
Helix 74	AI2	H	312	322	Right-handed alpha
Helix 75	AI3	H	342	348	Right-handed alpha

There are 8 sheets in PDB entry 6DY3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	23	28	first strand
Strand 2	B	152	159	parallel
Strand 3	B	162	170	anti-parallel
Strand 4	B	178	181	anti-parallel
Strand 5	B	185	191	anti-parallel
Strand 6	B	243	248	anti-parallel
Strand 7	B	255	260	anti-parallel
Strand 8	B	266	270	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	279	282	first strand
Strand 2	B	123	128	anti-parallel
Strand 3	B	134	141	anti-parallel
Strand 4	B	330	336	anti-parallel
Strand 5	B	352	353	anti-parallel

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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	23	28	first strand
Strand 2	D	152	159	parallel
Strand 3	D	162	170	anti-parallel
Strand 4	D	178	181	anti-parallel
Strand 5	D	185	191	anti-parallel
Strand 6	D	243	248	anti-parallel
Strand 7	D	255	260	anti-parallel
Strand 8	D	266	270	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	279	282	first strand
Strand 2	D	123	128	anti-parallel
Strand 3	D	134	141	anti-parallel
Strand 4	D	330	336	anti-parallel
Strand 5	D	352	353	anti-parallel

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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	23	28	first strand
Strand 2	F	152	159	parallel
Strand 3	F	162	170	anti-parallel
Strand 4	F	178	181	anti-parallel
Strand 5	F	185	191	anti-parallel
Strand 6	F	243	248	anti-parallel
Strand 7	F	255	260	anti-parallel
Strand 8	F	266	270	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	279	282	first strand
Strand 2	F	123	128	anti-parallel
Strand 3	F	134	141	anti-parallel
Strand 4	F	330	336	anti-parallel
Strand 5	F	352	353	anti-parallel

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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	23	28	first strand
Strand 2	H	152	159	parallel
Strand 3	H	162	170	anti-parallel
Strand 4	H	178	181	anti-parallel
Strand 5	H	185	191	anti-parallel
Strand 6	H	243	248	anti-parallel
Strand 7	H	255	260	anti-parallel
Strand 8	H	266	270	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	279	282	first strand
Strand 2	H	123	128	anti-parallel
Strand 3	H	134	141	anti-parallel
Strand 4	H	330	336	anti-parallel
Strand 5	H	352	353	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6DY3

Analysis of interatomic Contacts of Structural Units in PDB entry:
6DY3