Analysis of interatomic Contacts of Structural Units in PDB entry:
6DZD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6DZD entry

There are 2 chains in PDB entry 6DZD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 2LYS 277
B
 TYR 4LYS 277
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 6DZD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
58 73Right-handed alpha
Helix 2
AA2
A
76 78Right-handed 310
Helix 3
AA3
A
95 99Right-handed 310
Helix 4
AA4
A
105 109Right-handed 310
Helix 5
AA5
A
151 158Right-handed alpha
Helix 6
AA6
A
158 170Right-handed alpha
Helix 7
AA7
A
174 178Right-handed 310
Helix 8
AA8
A
187 190Right-handed 310
Helix 9
AA9
A
194 202Right-handed alpha
Helix 10
AB1
A
208 211Right-handed 310
Helix 11
AB2
A
224 237Right-handed alpha
Helix 12
AB3
A
239 241Right-handed 310
Helix 13
AB4
B
58 73Right-handed alpha
Helix 14
AB5
B
76 78Right-handed 310
Helix 15
AB6
B
95 99Right-handed 310
Helix 16
AB7
B
105 109Right-handed 310
Helix 17
AB8
B
151 157Right-handed alpha
Helix 18
AB9
B
158 172Right-handed alpha
Helix 19
AC1
B
174 178Right-handed 310
Helix 20
AC2
B
194 203Right-handed alpha
Helix 21
AC3
B
208 211Right-handed 310
Helix 22
AC4
B
224 237Right-handed alpha
Helix 23
AC5
B
239 241Right-handed 310
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There are 6 sheets in PDB entry 6DZD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
7 10first strand
Strand 2
A
14 17anti-parallel
Strand 3
A
30 35anti-parallel
Strand 4
A
270 276anti-parallel
Strand 5
A
124 129anti-parallel
Strand 6
A
80 82parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
91 93first strand
Strand 2
A
115 118parallel
Strand 3
A
144 150anti-parallel
Strand 4
A
133 139anti-parallel
Strand 5
A
179 182anti-parallel
Strand 6
A
243 245parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
192 193first strand
Strand 2
A
220 223anti-parallel
Strand 3
A
213 217anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
7 11first strand
Strand 2
B
14 17anti-parallel
Strand 3
B
30 35anti-parallel
Strand 4
B
270 276anti-parallel
Strand 5
B
124 129anti-parallel
Strand 6
B
80 82parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
91 93first strand
Strand 2
B
115 118parallel
Strand 3
B
144 150anti-parallel
Strand 4
B
133 139anti-parallel
Strand 5
B
179 182anti-parallel
Strand 6
B
243 245parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
192 193first strand
Strand 2
B
220 223anti-parallel
Strand 3
B
213 217anti-parallel
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