Analysis of interatomic Contacts of Structural Units in PDB entry:
6DZM

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6DZM entry

There are 12 chains in PDB entry 6DZM (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ILE 33	GLU 292
D	CYS 511	GLN 625
H	ASP 2	LYS 107
G	VAL 2	SER 112
B	ILE 33	GLU 292
E	CYS 511	GLN 625
K	ASP 2	LYS 107
I	VAL 2	SER 112
C	ILE 33	GLU 292
F	CYS 511	GLN 625
L	ASP 2	LYS 107
J	VAL 2	SER 112

There are 24 helices in PDB entry 6DZM. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	78	85	Right-handed alpha
Helix 2	AA2	A	249	263	Right-handed alpha
Helix 3	AA3	D	550	552	Right-handed 310
Helix 4	AA4	D	553	575	Right-handed alpha
Helix 5	AA5	D	583	597	Right-handed alpha
Helix 6	AA6	D	614	624	Right-handed alpha
Helix 7	AA7	H	81	85	Right-handed 310
Helix 8	AA8	G	28	32	Right-handed 310
Helix 9	AA9	B	78	85	Right-handed alpha
Helix 10	AB1	B	249	263	Right-handed alpha
Helix 11	AB2	E	550	552	Right-handed 310
Helix 12	AB3	E	553	575	Right-handed alpha
Helix 13	AB4	E	583	597	Right-handed alpha
Helix 14	AB5	E	614	624	Right-handed alpha
Helix 15	AB6	K	81	85	Right-handed 310
Helix 16	AB7	I	28	32	Right-handed 310
Helix 17	AB8	C	78	85	Right-handed alpha
Helix 18	AB9	C	249	263	Right-handed alpha
Helix 19	AC1	F	550	552	Right-handed 310
Helix 20	AC2	F	553	575	Right-handed alpha
Helix 21	AC3	F	583	597	Right-handed alpha
Helix 22	AC4	F	614	624	Right-handed alpha
Helix 23	AC5	L	81	85	Right-handed 310
Helix 24	AC6	J	28	32	Right-handed 310

There are 27 sheets in PDB entry 6DZM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	42	45	first strand
Strand 2	A	36	39	anti-parallel
Strand 3	A	177	185	parallel
Strand 4	A	63	69	anti-parallel
Strand 5	A	101	103	parallel
Strand 6	D	515	520	anti-parallel
Strand 7	D	543	548	anti-parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	42	45	first strand
Strand 2	A	36	39	anti-parallel
Strand 3	A	177	185	parallel
Strand 4	A	159	162	anti-parallel
Strand 5	A	165	167	anti-parallel
Strand 6	A	96	98	anti-parallel
Strand 7	D	580	581	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	86	87	first strand
Strand 2	A	153	154	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	109	115	first strand
Strand 2	A	139	145	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	233	237	first strand
Strand 2	A	240	243	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	6	8	first strand
Strand 2	H	20	25	anti-parallel
Strand 3	H	71	76	anti-parallel
Strand 4	H	63	68	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	54	55	first strand
Strand 2	H	46	50	anti-parallel
Strand 3	H	34	39	anti-parallel
Strand 4	H	86	91	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	18	22	first strand
Strand 2	G	77	82	anti-parallel
Strand 3	G	68	72	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	57	59	first strand
Strand 2	G	45	51	anti-parallel
Strand 3	G	35	39	anti-parallel
Strand 4	G	89	93	anti-parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	42	45	first strand
Strand 2	B	36	39	anti-parallel
Strand 3	B	177	185	parallel
Strand 4	B	63	69	anti-parallel
Strand 5	B	101	103	parallel
Strand 6	E	515	520	anti-parallel
Strand 7	E	543	548	anti-parallel

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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	42	45	first strand
Strand 2	B	36	39	anti-parallel
Strand 3	B	177	185	parallel
Strand 4	B	159	162	anti-parallel
Strand 5	B	165	167	anti-parallel
Strand 6	B	96	98	anti-parallel
Strand 7	E	580	581	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	86	87	first strand
Strand 2	B	153	154	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	109	115	first strand
Strand 2	B	139	145	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	233	237	first strand
Strand 2	B	240	243	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	6	8	first strand
Strand 2	K	20	25	anti-parallel
Strand 3	K	71	76	anti-parallel
Strand 4	K	63	68	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	54	55	first strand
Strand 2	K	46	50	anti-parallel
Strand 3	K	34	39	anti-parallel
Strand 4	K	86	91	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	18	22	first strand
Strand 2	I	77	82	anti-parallel
Strand 3	I	68	72	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	57	59	first strand
Strand 2	I	45	51	anti-parallel
Strand 3	I	35	39	anti-parallel
Strand 4	I	89	93	anti-parallel

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There are 7 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	42	45	first strand
Strand 2	C	36	39	anti-parallel
Strand 3	C	177	185	parallel
Strand 4	C	63	69	anti-parallel
Strand 5	C	101	103	parallel
Strand 6	F	515	520	anti-parallel
Strand 7	F	543	548	anti-parallel

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There are 7 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	42	45	first strand
Strand 2	C	36	39	anti-parallel
Strand 3	C	177	185	parallel
Strand 4	C	159	162	anti-parallel
Strand 5	C	165	167	anti-parallel
Strand 6	C	96	98	anti-parallel
Strand 7	F	580	581	parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	86	87	first strand
Strand 2	C	153	154	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	109	115	first strand
Strand 2	C	139	145	parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	233	237	first strand
Strand 2	C	240	243	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	6	8	first strand
Strand 2	L	20	25	anti-parallel
Strand 3	L	71	76	anti-parallel
Strand 4	L	63	68	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	54	55	first strand
Strand 2	L	46	50	anti-parallel
Strand 3	L	34	39	anti-parallel
Strand 4	L	86	91	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	18	22	first strand
Strand 2	J	77	82	anti-parallel
Strand 3	J	68	72	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	57	59	first strand
Strand 2	J	45	51	anti-parallel
Strand 3	J	35	39	anti-parallel
Strand 4	J	89	93	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6DZM

Analysis of interatomic Contacts of Structural Units in PDB entry:
6DZM