Analysis of interatomic Contacts of Structural Units in PDB entry:
6DZS

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6DZS entry

There are 2 chains in PDB entry 6DZS (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 4	THR 438
B	LYS 6	SER 259

There are 77 helices in PDB entry 6DZS. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	16	29	Right-handed alpha
Helix 2	AA2	A	29	38	Right-handed alpha
Helix 3	AA3	A	58	60	Right-handed 310
Helix 4	AA4	A	65	72	Right-handed alpha
Helix 5	AA5	A	84	98	Right-handed alpha
Helix 6	AA6	A	106	113	Right-handed alpha
Helix 7	AA7	A	114	124	Right-handed alpha
Helix 8	AA8	A	130	134	Right-handed 310
Helix 9	AA9	A	140	146	Right-handed alpha
Helix 10	AB1	A	161	175	Right-handed alpha
Helix 11	AB2	A	177	188	Right-handed alpha
Helix 12	AB3	A	195	200	Right-handed alpha
Helix 13	AB4	A	201	217	Right-handed alpha
Helix 14	AB5	A	221	225	Right-handed 310
Helix 15	AB6	A	234	244	Right-handed alpha
Helix 16	AB7	A	279	284	Right-handed 310
Helix 17	AB8	A	309	331	Right-handed alpha
Helix 18	AB9	A	347	350	Right-handed 310
Helix 19	AC1	A	366	377	Right-handed alpha
Helix 20	AC2	A	410	423	Right-handed alpha
Helix 21	AC3	B	15	29	Right-handed alpha
Helix 22	AC4	B	29	38	Right-handed alpha
Helix 23	AC5	B	58	60	Right-handed 310
Helix 24	AC6	B	65	72	Right-handed alpha
Helix 25	AC7	B	84	98	Right-handed alpha
Helix 26	AC8	B	106	113	Right-handed alpha
Helix 27	AC9	B	114	124	Right-handed alpha
Helix 28	AD1	B	130	134	Right-handed 310
Helix 29	AD2	B	140	146	Right-handed alpha
Helix 30	AD3	B	161	175	Right-handed alpha
Helix 31	AD4	B	177	188	Right-handed alpha
Helix 32	AD5	B	195	200	Right-handed alpha
Helix 33	AD6	B	201	217	Right-handed alpha
Helix 34	AD7	B	221	225	Right-handed 310
Helix 35	AD8	B	234	244	Right-handed alpha
Helix 36	AD9	B	279	284	Right-handed 310
Helix 37	AE1	B	309	331	Right-handed alpha
Helix 38	AE2	B	366	378	Right-handed alpha
Helix 39	AE3	B	410	422	Right-handed alpha
Helix 40	AE4	C	16	29	Right-handed alpha
Helix 41	AE5	C	29	38	Right-handed alpha
Helix 42	AE6	C	58	60	Right-handed 310
Helix 43	AE7	C	65	72	Right-handed alpha
Helix 44	AE8	C	84	98	Right-handed alpha
Helix 45	AE9	C	106	113	Right-handed alpha
Helix 46	AF1	C	115	124	Right-handed alpha
Helix 47	AF2	C	130	134	Right-handed 310
Helix 48	AF3	C	140	146	Right-handed alpha
Helix 49	AF4	C	161	175	Right-handed alpha
Helix 50	AF5	C	177	188	Right-handed alpha
Helix 51	AF6	C	195	200	Right-handed alpha
Helix 52	AF7	C	201	217	Right-handed alpha
Helix 53	AF8	C	221	225	Right-handed 310
Helix 54	AF9	C	234	244	Right-handed alpha
Helix 55	AG1	C	279	284	Right-handed 310
Helix 56	AG2	C	309	331	Right-handed alpha
Helix 57	AG3	C	366	377	Right-handed alpha
Helix 58	AG4	C	410	422	Right-handed alpha
Helix 59	AG5	D	18	29	Right-handed alpha
Helix 60	AG6	D	29	38	Right-handed alpha
Helix 61	AG7	D	65	71	Right-handed alpha
Helix 62	AG8	D	84	98	Right-handed alpha
Helix 63	AG9	D	106	113	Right-handed alpha
Helix 64	AH1	D	115	124	Right-handed alpha
Helix 65	AH2	D	130	134	Right-handed 310
Helix 66	AH3	D	140	146	Right-handed alpha
Helix 67	AH4	D	161	175	Right-handed alpha
Helix 68	AH5	D	177	188	Right-handed alpha
Helix 69	AH6	D	195	200	Right-handed alpha
Helix 70	AH7	D	201	216	Right-handed alpha
Helix 71	AH8	D	221	225	Right-handed 310
Helix 72	AH9	D	234	244	Right-handed alpha
Helix 73	AI1	D	279	284	Right-handed 310
Helix 74	AI2	D	309	331	Right-handed alpha
Helix 75	AI3	D	347	350	Right-handed 310
Helix 76	AI4	D	366	377	Right-handed alpha
Helix 77	AI5	D	410	422	Right-handed alpha

There are 10 sheets in PDB entry 6DZS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	62	63	first strand
Strand 2	A	41	47	parallel
Strand 3	A	8	13	parallel
Strand 4	A	77	80	parallel
Strand 5	A	101	104	parallel
Strand 6	A	128	129	parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	226	227	first strand
Strand 2	A	264	276	parallel
Strand 3	A	426	435	parallel
Strand 4	A	352	362	anti-parallel
Strand 5	A	408	409	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	226	227	first strand
Strand 2	B	264	276	parallel
Strand 3	B	426	435	parallel
Strand 4	B	352	361	anti-parallel
Strand 5	B	408	409	anti-parallel

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There are 18 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	382	389	first strand
Strand 2	A	398	405	anti-parallel
Strand 3	A	352	362	anti-parallel
Strand 4	A	426	435	anti-parallel
Strand 5	A	264	276	parallel
Strand 6	A	246	258	anti-parallel
Strand 7	A	153	159	anti-parallel
Strand 8	A	289	295	anti-parallel
Strand 9	A	299	305	anti-parallel
Strand 10	B	299	306	anti-parallel
Strand 11	B	288	295	anti-parallel
Strand 12	B	153	159	anti-parallel
Strand 13	B	246	258	anti-parallel
Strand 14	B	264	276	anti-parallel
Strand 15	B	426	435	parallel
Strand 16	B	352	361	anti-parallel
Strand 17	B	400	405	anti-parallel
Strand 18	B	382	388	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	62	63	first strand
Strand 2	B	41	47	parallel
Strand 3	B	8	13	parallel
Strand 4	B	77	80	parallel
Strand 5	B	101	104	parallel
Strand 6	B	128	129	parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	62	63	first strand
Strand 2	C	41	47	parallel
Strand 3	C	8	13	parallel
Strand 4	C	77	80	parallel
Strand 5	C	101	104	parallel
Strand 6	C	128	129	parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	226	227	first strand
Strand 2	C	264	276	parallel
Strand 3	C	426	435	parallel
Strand 4	C	352	361	anti-parallel
Strand 5	C	408	409	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	226	227	first strand
Strand 2	D	264	276	parallel
Strand 3	D	426	435	parallel
Strand 4	D	352	361	anti-parallel
Strand 5	D	408	409	anti-parallel

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There are 18 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	382	389	first strand
Strand 2	C	399	405	anti-parallel
Strand 3	C	352	361	anti-parallel
Strand 4	C	426	435	anti-parallel
Strand 5	C	264	276	parallel
Strand 6	C	246	258	anti-parallel
Strand 7	C	153	159	anti-parallel
Strand 8	C	288	295	anti-parallel
Strand 9	C	299	306	anti-parallel
Strand 10	D	299	306	anti-parallel
Strand 11	D	288	295	anti-parallel
Strand 12	D	153	159	anti-parallel
Strand 13	D	246	258	anti-parallel
Strand 14	D	264	276	anti-parallel
Strand 15	D	426	435	parallel
Strand 16	D	352	361	anti-parallel
Strand 17	D	399	405	anti-parallel
Strand 18	D	382	388	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	62	63	first strand
Strand 2	D	41	47	parallel
Strand 3	D	8	13	parallel
Strand 4	D	77	80	parallel
Strand 5	D	101	104	parallel
Strand 6	D	128	129	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6DZS

Analysis of interatomic Contacts of Structural Units in PDB entry:
6DZS