Analysis of interatomic Contacts of Structural Units in PDB entry:
6DZV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6DZV entry

There are 3 chains in PDB entry 6DZV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 79GLU 615
B
 GLN 20THR 137
C
 ASP 21ILE 130
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 34 helices in PDB entry 6DZV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
84 97Right-handed alpha
Helix 2
AA2
A
98 110Right-handed alpha
Helix 3
AA3
A
111 113Right-handed 310
Helix 4
AA4
A
114 128Right-handed alpha
Helix 5
AA5
A
128 144Right-handed alpha
Helix 6
AA6
A
150 155Right-handed alpha
Helix 7
AA7
A
156 159Right-handed 310
Helix 8
AA8
A
160 190Right-handed alpha
Helix 9
AA9
A
205 209Right-handed 310
Helix 10
AB1
A
226 234Right-handed alpha
Helix 11
AB2
A
252 273Right-handed alpha
Helix 12
AB3
A
274 280Right-handed 310
Helix 13
AB4
A
285 300Right-handed alpha
Helix 14
AB5
A
302 304Right-handed 310
Helix 15
AB6
A
305 313Right-handed alpha
Helix 16
AB7
A
316 320Right-handed 310
Helix 17
AB8
A
325 338Right-handed alpha
Helix 18
AB9
A
342 348Right-handed alpha
Helix 19
AC1
A
349 351Right-handed 310
Helix 20
AC2
A
356 391Right-handed alpha
Helix 21
AC3
A
403 417Right-handed alpha
Helix 22
AC4
A
422 454Right-handed alpha
Helix 23
AC5
A
454 460Right-handed alpha
Helix 24
AC6
A
461 482Right-handed alpha
Helix 25
AC7
A
486 495Right-handed alpha
Helix 26
AC8
A
498 514Right-handed alpha
Helix 27
AC9
A
517 530Right-handed alpha
Helix 28
AD1
A
536 541Right-handed alpha
Helix 29
AD2
A
543 559Right-handed alpha
Helix 30
AD3
A
571 585Right-handed alpha
Helix 31
AD4
A
587 600Right-handed alpha
Helix 32
AD5
A
603 612Right-handed alpha
Helix 33
AD6
B
106 110Right-handed 310
Helix 34
AD7
C
103 107Right-handed 310
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There are 7 sheets in PDB entry 6DZV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
29 30first strand
Strand 2
B
134 137parallel
Strand 3
B
112 117anti-parallel
Strand 4
B
53 58anti-parallel
Strand 5
B
65 70anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
36 39first strand
Strand 2
B
97 103anti-parallel
Strand 3
B
87 92anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
24 25first strand
Strand 2
C
44 45anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
30 32first strand
Strand 2
C
127 129parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
50 51first strand
Strand 2
C
54 55anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
77 78first strand
Strand 2
C
69 73anti-parallel
Strand 3
C
58 61anti-parallel
Strand 4
C
112 113anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
89 90first strand
Strand 2
C
95 96anti-parallel
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