Analysis of interatomic Contacts of Structural Units in PDB entry:
6DZW

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6DZW entry

There are 4 chains in PDB entry 6DZW (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ARG 79	GLU 615
V	GLU 16	ILE 255
H	GLN 20	THR 137
L	ASP 21	ILE 130

There are 38 helices in PDB entry 6DZW. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	84	97	Right-handed alpha
Helix 2	AA2	A	98	102	Right-handed 310
Helix 3	AA3	A	103	112	Right-handed alpha
Helix 4	AA4	A	113	116	Right-handed 310
Helix 5	AA5	A	117	128	Right-handed alpha
Helix 6	AA6	A	128	144	Right-handed alpha
Helix 7	AA7	A	155	157	Right-handed 310
Helix 8	AA8	A	158	190	Right-handed alpha
Helix 9	AA9	A	226	234	Right-handed alpha
Helix 10	AB1	A	238	242	Right-handed 310
Helix 11	AB2	A	252	271	Right-handed alpha
Helix 12	AB3	A	273	285	Right-handed alpha
Helix 13	AB4	A	286	301	Right-handed alpha
Helix 14	AB5	A	305	314	Right-handed alpha
Helix 15	AB6	A	323	338	Right-handed alpha
Helix 16	AB7	A	344	350	Right-handed alpha
Helix 17	AB8	A	356	375	Right-handed alpha
Helix 18	AB9	A	376	390	Right-handed alpha
Helix 19	AC1	A	393	398	Right-handed alpha
Helix 20	AC2	A	403	408	Right-handed alpha
Helix 21	AC3	A	408	416	Right-handed alpha
Helix 22	AC4	A	419	454	Right-handed alpha
Helix 23	AC5	A	461	466	Right-handed alpha
Helix 24	AC6	A	466	477	Right-handed alpha
Helix 25	AC7	A	478	480	Right-handed 310
Helix 26	AC8	A	484	495	Right-handed alpha
Helix 27	AC9	A	496	514	Right-handed alpha
Helix 28	AD1	A	517	530	Right-handed alpha
Helix 29	AD2	A	534	541	Right-handed alpha
Helix 30	AD3	A	543	557	Right-handed alpha
Helix 31	AD4	A	573	587	Right-handed alpha
Helix 32	AD5	A	587	600	Right-handed alpha
Helix 33	AD6	A	605	610	Right-handed alpha
Helix 34	AD7	V	77	80	Right-handed 310
Helix 35	AD8	V	102	105	Right-handed 310
Helix 36	AD9	H	47	51	Right-handed 310
Helix 37	AE1	L	74	76	Right-handed 310
Helix 38	AE2	L	103	107	Right-handed 310

There are 13 sheets in PDB entry 6DZW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	V	18	19	first strand
Strand 2	V	35	40	anti-parallel
Strand 3	V	93	98	anti-parallel
Strand 4	V	83	86	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	V	73	75	first strand
Strand 2	V	60	66	anti-parallel
Strand 3	V	49	55	anti-parallel
Strand 4	V	107	109	anti-parallel
Strand 5	V	128	130	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	V	153	155	first strand
Strand 2	V	168	174	anti-parallel
Strand 3	V	219	224	anti-parallel
Strand 4	V	211	216	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	V	159	160	first strand
Strand 2	V	251	253	parallel
Strand 3	V	234	237	anti-parallel
Strand 4	V	184	187	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	V	197	198	first strand
Strand 2	V	202	203	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	22	25	first strand
Strand 2	H	38	44	anti-parallel
Strand 3	H	97	102	anti-parallel
Strand 4	H	87	92	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	29	30	first strand
Strand 2	H	134	137	parallel
Strand 3	H	111	118	anti-parallel
Strand 4	H	53	58	anti-parallel
Strand 5	H	64	70	anti-parallel
Strand 6	H	77	79	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	29	30	first strand
Strand 2	H	134	137	parallel
Strand 3	H	111	118	anti-parallel
Strand 4	H	127	130	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	24	27	first strand
Strand 2	L	42	45	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	30	32	first strand
Strand 2	L	126	129	parallel
Strand 3	L	109	114	anti-parallel
Strand 4	L	57	62	anti-parallel
Strand 5	L	68	70	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	30	32	first strand
Strand 2	L	126	129	parallel
Strand 3	L	109	114	anti-parallel
Strand 4	L	121	122	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	72	73	first strand
Strand 2	L	77	78	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	86	91	first strand
Strand 2	L	94	99	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6DZW

Analysis of interatomic Contacts of Structural Units in PDB entry:
6DZW