Analysis of interatomic Contacts of Structural Units in PDB entry:
6E09

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6E09 entry

There are 4 chains in PDB entry 6E09 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 29	LYS 290
B	SER 29	ILE 288
C	SER 27	ASP 291
D	SER 29	VAL 293

There are 32 helices in PDB entry 6E09. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	29	75	Right-handed alpha
Helix 2	AA2	A	80	95	Right-handed alpha
Helix 3	AA3	A	134	143	Right-handed alpha
Helix 4	AA4	A	191	196	Right-handed alpha
Helix 5	AA5	A	207	209	Right-handed 310
Helix 6	AA6	A	216	220	Right-handed 310
Helix 7	AA7	A	223	228	Right-handed alpha
Helix 8	AA8	A	231	244	Right-handed alpha
Helix 9	AA9	B	30	75	Right-handed alpha
Helix 10	AB1	B	80	95	Right-handed alpha
Helix 11	AB2	B	191	196	Right-handed alpha
Helix 12	AB3	B	207	209	Right-handed 310
Helix 13	AB4	B	216	220	Right-handed 310
Helix 14	AB5	B	223	228	Right-handed alpha
Helix 15	AB6	B	231	245	Right-handed alpha
Helix 16	AB7	C	28	75	Right-handed alpha
Helix 17	AB8	C	80	95	Right-handed alpha
Helix 18	AB9	C	135	143	Right-handed alpha
Helix 19	AC1	C	191	196	Right-handed alpha
Helix 20	AC2	C	207	209	Right-handed 310
Helix 21	AC3	C	216	220	Right-handed 310
Helix 22	AC4	C	223	228	Right-handed alpha
Helix 23	AC5	C	231	245	Right-handed alpha
Helix 24	AC6	D	30	75	Right-handed alpha
Helix 25	AC7	D	80	95	Right-handed alpha
Helix 26	AC8	D	136	143	Right-handed alpha
Helix 27	AC9	D	191	196	Right-handed alpha
Helix 28	AD1	D	207	209	Right-handed 310
Helix 29	AD2	D	216	220	Right-handed 310
Helix 30	AD3	D	223	228	Right-handed alpha
Helix 31	AD4	D	231	245	Right-handed alpha
Helix 32	AD5	D	291	293	Right-handed 310

There are 12 sheets in PDB entry 6E09. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	121	125	first strand
Strand 2	A	108	117	anti-parallel
Strand 3	A	98	105	anti-parallel
Strand 4	A	178	187	anti-parallel
Strand 5	A	160	171	anti-parallel
Strand 6	A	146	147	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	121	125	first strand
Strand 2	A	108	117	anti-parallel
Strand 3	A	98	105	anti-parallel
Strand 4	A	178	187	anti-parallel
Strand 5	A	160	171	anti-parallel
Strand 6	A	151	154	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	211	214	first strand
Strand 2	A	202	205	anti-parallel
Strand 3	A	281	289	anti-parallel
Strand 4	A	260	269	anti-parallel
Strand 5	A	247	253	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	121	124	first strand
Strand 2	B	112	117	anti-parallel
Strand 3	B	98	105	anti-parallel
Strand 4	B	180	187	anti-parallel
Strand 5	B	160	170	anti-parallel
Strand 6	B	146	147	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	121	124	first strand
Strand 2	B	112	117	anti-parallel
Strand 3	B	98	105	anti-parallel
Strand 4	B	180	187	anti-parallel
Strand 5	B	160	170	anti-parallel
Strand 6	B	151	154	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	211	213	first strand
Strand 2	B	202	205	anti-parallel
Strand 3	B	281	288	anti-parallel
Strand 4	B	260	269	anti-parallel
Strand 5	B	248	253	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	122	124	first strand
Strand 2	C	112	116	anti-parallel
Strand 3	C	98	105	anti-parallel
Strand 4	C	178	187	anti-parallel
Strand 5	C	160	171	anti-parallel
Strand 6	C	146	147	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	122	124	first strand
Strand 2	C	112	116	anti-parallel
Strand 3	C	98	105	anti-parallel
Strand 4	C	178	187	anti-parallel
Strand 5	C	160	171	anti-parallel
Strand 6	C	151	154	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	211	214	first strand
Strand 2	C	202	205	anti-parallel
Strand 3	C	281	289	anti-parallel
Strand 4	C	260	269	anti-parallel
Strand 5	C	247	253	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	121	125	first strand
Strand 2	D	113	118	anti-parallel
Strand 3	D	98	105	anti-parallel
Strand 4	D	178	187	anti-parallel
Strand 5	D	160	171	anti-parallel
Strand 6	D	146	147	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	121	125	first strand
Strand 2	D	113	118	anti-parallel
Strand 3	D	98	105	anti-parallel
Strand 4	D	178	187	anti-parallel
Strand 5	D	160	171	anti-parallel
Strand 6	D	151	154	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	211	214	first strand
Strand 2	D	202	205	anti-parallel
Strand 3	D	281	289	anti-parallel
Strand 4	D	260	269	anti-parallel
Strand 5	D	247	253	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6E09

Analysis of interatomic Contacts of Structural Units in PDB entry:
6E09