Analysis of interatomic Contacts of Structural Units in PDB entry:
6E0S


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6E0S entry

There is 1 chain in PDB entry 6E0S (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 23LYS 286
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 11 helices in PDB entry 6E0S. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
65 77Right-handed alpha
Helix 2
AA2
A
80 82Right-handed 310
Helix 3
AA3
A
93 98Right-handed alpha
Helix 4
AA4
A
99 108Right-handed alpha
Helix 5
AA5
A
115 124Right-handed alpha
Helix 6
AA6
A
213 227Right-handed alpha
Helix 7
AA7
A
237 241Right-handed 310
Helix 8
AA8
A
242 248Right-handed alpha
Helix 9
AA9
A
249 254Right-handed alpha
Helix 10
AB1
A
255 259Right-handed 310
Helix 11
AB2
A
262 286Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 6E0S. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
31 34first strand
Strand 2
A
37 39anti-parallel
Strand 3
A
48 50anti-parallel
Strand 4
A
56 59anti-parallel
Strand 5
A
84 88parallel
Strand 6
A
110 114parallel
Strand 7
A
145 148parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
153 156first strand
Strand 2
A
159 165anti-parallel
Strand 3
A
174 182anti-parallel
Strand 4
A
185 192anti-parallel
Strand 5
A
232 235parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il