Analysis of interatomic Contacts of Structural Units in PDB entry:
6E0T


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6E0T entry

There is 1 chain in PDB entry 6E0T (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
X
 SER 251GLU 515
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 9 helices in PDB entry 6E0T. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
X
277 285Right-handed alpha
Helix 2
AA2
X
289 293Right-handed 310
Helix 3
AA3
X
294 309Right-handed alpha
Helix 4
AA4
X
318 335Right-handed alpha
Helix 5
AA5
X
340 344Right-handed 310
Helix 6
AA6
X
376 379Right-handed 310
Helix 7
AA7
X
380 392Right-handed alpha
Helix 8
AA8
X
436 440Right-handed 310
Helix 9
AA9
X
496 500Right-handed 310
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There are 4 sheets in PDB entry 6E0T. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
X
268 269first strand
Strand 2
X
395 405anti-parallel
Strand 3
X
503 512anti-parallel
Strand 4
X
421 428anti-parallel
Strand 5
X
476 484anti-parallel
Strand 6
X
310 313anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
X
268 269first strand
Strand 2
X
395 405anti-parallel
Strand 3
X
360 362anti-parallel
Strand 4
X
349 350anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
X
357 358first strand
Strand 2
X
411 412anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
X
468 472first strand
Strand 2
X
443 447anti-parallel
Strand 3
X
488 492anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il