Analysis of interatomic Contacts of Structural Units in PDB entry:
6E14

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6E14 entry

There are 5 chains in PDB entry 6E14 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
H	PHE 1	GLN 279
D	LEU 2	SER 834
F	ALA 1	GLN 154
G	ASP 2	SER 144
C	GLY 1	GLU 205

There are 6 helices in PDB entry 6E14. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	D	19	24	Right-handed alpha
Helix 2	AA2	D	92	97	Right-handed alpha
Helix 3	AA3	D	246	250	Right-handed 310
Helix 4	AA4	D	443	449	Right-handed alpha
Helix 5	AA5	F	108	112	Right-handed 310
Helix 6	AA6	C	123	127	Right-handed 310

There are 30 sheets in PDB entry 6E14. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	2	4	first strand
Strand 2	H	43	45	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	19	21	first strand
Strand 2	H	142	149	parallel
Strand 3	H	128	134	anti-parallel
Strand 4	H	54	58	anti-parallel
Strand 5	H	93	95	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	33	37	first strand
Strand 2	H	105	109	anti-parallel
Strand 3	H	73	77	anti-parallel
Strand 4	H	80	84	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	117	118	first strand
Strand 2	H	156	157	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	161	163	first strand
Strand 2	H	184	187	anti-parallel
Strand 3	H	248	249	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	167	171	first strand
Strand 2	G	4	10	parallel
Strand 3	H	267	274	anti-parallel
Strand 4	H	197	198	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	179	180	first strand
Strand 2	H	253	258	anti-parallel
Strand 3	H	221	226	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	194	195	first strand
Strand 2	H	238	239	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	36	38	first strand
Strand 2	D	43	46	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	51	53	first strand
Strand 2	D	60	62	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	102	105	first strand
Strand 2	D	110	113	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	198	202	first strand
Strand 2	D	175	185	anti-parallel
Strand 3	D	161	172	anti-parallel
Strand 4	D	139	149	anti-parallel
Strand 5	D	645	659	anti-parallel
Strand 6	D	152	153	anti-parallel

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There are 8 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	175	185	first strand
Strand 2	D	204	208	anti-parallel
Strand 3	D	214	222	anti-parallel
Strand 4	D	232	240	anti-parallel
Strand 5	D	329	338	anti-parallel
Strand 6	D	349	359	anti-parallel
Strand 7	D	363	371	anti-parallel
Strand 8	D	376	387	anti-parallel

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There are 8 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	376	387	first strand
Strand 2	D	390	400	anti-parallel
Strand 3	D	411	419	anti-parallel
Strand 4	D	429	437	anti-parallel
Strand 5	D	480	490	anti-parallel
Strand 6	D	496	507	anti-parallel
Strand 7	D	513	524	anti-parallel
Strand 8	D	529	537	anti-parallel

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There are 9 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	529	537	first strand
Strand 2	D	546	557	anti-parallel
Strand 3	D	572	580	anti-parallel
Strand 4	D	586	595	anti-parallel
Strand 5	D	602	610	anti-parallel
Strand 6	D	622	629	anti-parallel
Strand 7	D	634	641	anti-parallel
Strand 8	D	645	659	anti-parallel
Strand 9	D	662	666	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	256	260	first strand
Strand 2	D	283	287	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	273	280	first strand
Strand 2	D	264	270	anti-parallel
Strand 3	D	299	304	anti-parallel
Strand 4	D	313	315	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	402	403	first strand
Strand 2	D	407	408	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	699	701	first strand
Strand 2	D	673	677	anti-parallel
Strand 3	D	740	741	parallel

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There are 6 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	751	756	first strand
Strand 2	D	786	792	anti-parallel
Strand 3	D	778	782	anti-parallel
Strand 4	D	769	771	anti-parallel
Strand 5	D	797	801	anti-parallel
Strand 6	D	810	813	anti-parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	25	30	first strand
Strand 2	F	3	11	parallel
Strand 3	G	135	144	anti-parallel
Strand 4	G	60	66	anti-parallel
Strand 5	G	101	105	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	18	19	first strand
Strand 2	F	47	53	anti-parallel
Strand 3	F	123	131	anti-parallel
Strand 4	F	93	96	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	62	63	first strand
Strand 2	F	115	116	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	67	68	first strand
Strand 2	F	148	152	anti-parallel
Strand 3	C	107	114	parallel
Strand 4	C	8	9	parallel

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There are 6 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	67	68	first strand
Strand 2	F	148	152	anti-parallel
Strand 3	C	107	114	parallel
Strand 4	C	82	90	anti-parallel
Strand 5	C	30	38	anti-parallel
Strand 6	C	54	58	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	17	18	first strand
Strand 2	G	51	52	anti-parallel
Strand 3	G	112	113	anti-parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	46	47	first strand
Strand 2	G	117	119	anti-parallel
Strand 3	G	88	89	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	2	3	first strand
Strand 2	C	18	24	anti-parallel
Strand 3	C	62	67	anti-parallel
Strand 4	C	50	51	anti-parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	132	135	first strand
Strand 2	C	139	143	anti-parallel
Strand 3	C	172	176	anti-parallel

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There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	165	167	first strand
Strand 2	C	150	156	anti-parallel
Strand 3	C	186	189	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6E14

Analysis of interatomic Contacts of Structural Units in PDB entry:
6E14