Analysis of interatomic Contacts of Structural Units in PDB entry:
6E15

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6E15 entry

There are 5 chains in PDB entry 6E15 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
C	GLY 1	GLU 205
D	GLN 26	SER 834
F	ALA 1	GLN 154
G	ALA 1	SER 144
H	PHE 1	GLN 279

There are 15 helices in PDB entry 6E15. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	C	123	128	Right-handed 310
Helix 2	AA2	D	65	71	Right-handed alpha
Helix 3	AA3	D	92	97	Right-handed alpha
Helix 4	AA4	D	116	120	Right-handed 310
Helix 5	AA5	D	129	133	Right-handed 310
Helix 6	AA6	D	242	245	Right-handed 310
Helix 7	AA7	D	293	297	Right-handed 310
Helix 8	AA8	D	443	448	Right-handed 310
Helix 9	AA9	D	475	478	Right-handed 310
Helix 10	AB1	D	558	561	Right-handed 310
Helix 11	AB2	D	567	570	Right-handed 310
Helix 12	AB3	D	782	784	Right-handed 310
Helix 13	AB4	F	29	35	Right-handed alpha
Helix 14	AB5	F	108	112	Right-handed 310
Helix 15	AB6	H	65	71	Right-handed 310

There are 32 sheets in PDB entry 6E15. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	2	3	first strand
Strand 2	C	18	24	anti-parallel
Strand 3	C	61	69	anti-parallel
Strand 4	C	48	51	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	10	11	first strand
Strand 2	C	114	115	parallel
Strand 3	C	81	91	anti-parallel
Strand 4	C	31	39	anti-parallel
Strand 5	C	54	57	anti-parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	10	11	first strand
Strand 2	C	114	115	parallel
Strand 3	C	81	91	anti-parallel
Strand 4	C	105	111	anti-parallel
Strand 5	F	147	152	parallel
Strand 6	F	62	68	anti-parallel
Strand 7	F	115	116	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	132	134	first strand
Strand 2	C	139	143	anti-parallel
Strand 3	C	172	176	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	165	167	first strand
Strand 2	C	150	153	anti-parallel
Strand 3	C	186	190	anti-parallel
Strand 4	C	196	201	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	60	62	first strand
Strand 2	D	46	53	anti-parallel
Strand 3	D	32	37	anti-parallel
Strand 4	D	110	114	parallel
Strand 5	D	101	105	anti-parallel

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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	662	666	first strand
Strand 2	D	645	659	anti-parallel
Strand 3	D	139	153	anti-parallel
Strand 4	D	158	172	anti-parallel
Strand 5	D	175	186	anti-parallel
Strand 6	D	198	209	anti-parallel
Strand 7	D	214	222	anti-parallel
Strand 8	D	232	240	anti-parallel

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There are 8 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	232	240	first strand
Strand 2	D	329	338	anti-parallel
Strand 3	D	349	358	anti-parallel
Strand 4	D	363	372	anti-parallel
Strand 5	D	375	380	anti-parallel
Strand 6	D	392	402	anti-parallel
Strand 7	D	383	384	anti-parallel
Strand 8	D	363	372	anti-parallel

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There are 8 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	392	402	first strand
Strand 2	D	408	422	anti-parallel
Strand 3	D	427	437	anti-parallel
Strand 4	D	480	492	anti-parallel
Strand 5	D	496	507	anti-parallel
Strand 6	D	514	525	anti-parallel
Strand 7	D	528	538	anti-parallel
Strand 8	D	546	556	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	546	556	first strand
Strand 2	D	572	580	anti-parallel
Strand 3	D	586	595	anti-parallel
Strand 4	D	603	612	anti-parallel
Strand 5	D	619	620	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	603	612	first strand
Strand 2	D	623	630	anti-parallel
Strand 3	D	633	642	anti-parallel
Strand 4	D	645	659	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	256	260	first strand
Strand 2	D	283	287	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	273	280	first strand
Strand 2	D	264	270	anti-parallel
Strand 3	D	299	305	anti-parallel
Strand 4	D	310	315	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	699	702	first strand
Strand 2	D	673	677	anti-parallel
Strand 3	D	740	744	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	711	713	first strand
Strand 2	D	731	733	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	724	725	first strand
Strand 2	D	748	749	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	786	792	first strand
Strand 2	D	751	756	anti-parallel
Strand 3	D	825	828	parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	758	759	first strand
Strand 2	D	762	763	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	778	780	first strand
Strand 2	D	769	772	anti-parallel
Strand 3	D	795	801	anti-parallel
Strand 4	D	810	815	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	22	24	first strand
Strand 2	F	3	12	parallel
Strand 3	G	30	31	parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	22	24	first strand
Strand 2	F	3	12	parallel
Strand 3	G	132	143	anti-parallel
Strand 4	G	60	66	anti-parallel
Strand 5	G	101	105	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	18	19	first strand
Strand 2	F	49	53	anti-parallel
Strand 3	F	123	132	anti-parallel
Strand 4	F	92	96	anti-parallel

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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	167	171	first strand
Strand 2	G	4	11	parallel
Strand 3	H	266	278	anti-parallel
Strand 4	H	191	198	anti-parallel
Strand 5	H	238	243	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	17	18	first strand
Strand 2	G	50	52	anti-parallel
Strand 3	G	113	114	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	45	47	first strand
Strand 2	G	117	123	anti-parallel
Strand 3	G	84	90	anti-parallel
Strand 4	G	75	76	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	2	4	first strand
Strand 2	H	43	45	anti-parallel
Strand 3	H	101	102	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	21	22	first strand
Strand 2	H	149	150	parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	33	37	first strand
Strand 2	H	105	109	anti-parallel
Strand 3	H	73	77	anti-parallel
Strand 4	H	80	84	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	93	95	first strand
Strand 2	H	54	58	anti-parallel
Strand 3	H	128	135	anti-parallel
Strand 4	H	142	147	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	117	120	first strand
Strand 2	H	154	157	anti-parallel

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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	161	163	first strand
Strand 2	H	184	187	anti-parallel
Strand 3	H	248	249	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	179	181	first strand
Strand 2	H	252	255	anti-parallel
Strand 3	H	224	227	anti-parallel
Strand 4	H	230	231	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6E15

Analysis of interatomic Contacts of Structural Units in PDB entry:
6E15