Analysis of interatomic Contacts of Structural Units in PDB entry:
6E17


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6E17 entry

There are 4 chains in PDB entry 6E17 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 38PRO 194
B
 LEU 37PRO 194
C
 LEU 37PRO 194
D
 ASN 38PRO 194
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 28 helices in PDB entry 6E17. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
53 57Right-handed 310
Helix 2
AA2
A
66 70Right-handed 310
Helix 3
AA3
A
85 96Right-handed alpha
Helix 4
AA4
A
143 145Right-handed 310
Helix 5
AA5
A
168 176Right-handed alpha
Helix 6
AA6
A
182 185Right-handed 310
Helix 7
AA7
A
186 193Right-handed alpha
Helix 8
AA8
B
53 57Right-handed 310
Helix 9
AA9
B
66 70Right-handed 310
Helix 10
AB1
B
85 96Right-handed alpha
Helix 11
AB2
B
143 145Right-handed 310
Helix 12
AB3
B
168 176Right-handed alpha
Helix 13
AB4
B
182 185Right-handed 310
Helix 14
AB5
B
186 193Right-handed alpha
Helix 15
AB6
C
53 57Right-handed 310
Helix 16
AB7
C
66 70Right-handed 310
Helix 17
AB8
C
85 96Right-handed alpha
Helix 18
AB9
C
143 145Right-handed 310
Helix 19
AC1
C
168 176Right-handed alpha
Helix 20
AC2
C
182 185Right-handed 310
Helix 21
AC3
C
186 193Right-handed alpha
Helix 22
AC4
D
53 57Right-handed 310
Helix 23
AC5
D
66 70Right-handed 310
Helix 24
AC6
D
85 96Right-handed alpha
Helix 25
AC7
D
143 145Right-handed 310
Helix 26
AC8
D
168 176Right-handed alpha
Helix 27
AC9
D
182 185Right-handed 310
Helix 28
AD1
D
186 193Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 6E17. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
58 64first strand
Strand 2
A
79 84anti-parallel
Strand 3
A
102 116anti-parallel
Strand 4
A
119 135anti-parallel
Strand 5
A
147 151anti-parallel
Strand 6
A
161 162anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
58 64first strand
Strand 2
B
79 84anti-parallel
Strand 3
B
103 116anti-parallel
Strand 4
B
119 135anti-parallel
Strand 5
B
147 151anti-parallel
Strand 6
B
161 162anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
58 64first strand
Strand 2
C
79 84anti-parallel
Strand 3
C
102 116anti-parallel
Strand 4
C
119 135anti-parallel
Strand 5
C
147 151anti-parallel
Strand 6
C
161 162anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
58 64first strand
Strand 2
D
79 84anti-parallel
Strand 3
D
102 116anti-parallel
Strand 4
D
119 135anti-parallel
Strand 5
D
147 151anti-parallel
Strand 6
D
161 162anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il