Analysis of interatomic Contacts of Structural Units in PDB entry:
6E1I


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6E1I entry

There is 1 chain in PDB entry 6E1I (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 TYR 1PHE 422
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 7 helices in PDB entry 6E1I. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
192 198Right-handed 310
Helix 2
AA2
A
199 228Right-handed alpha
Helix 3
AA3
A
280 294Right-handed alpha
Helix 4
AA4
A
294 305Right-handed alpha
Helix 5
AA5
A
305 318Right-handed alpha
Helix 6
AA6
A
318 323Right-handed alpha
Helix 7
AA7
A
396 398Right-handed 310
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There are 7 sheets in PDB entry 6E1I. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
30 35first strand
Strand 2
A
45 54anti-parallel
Strand 3
A
86 94anti-parallel
Strand 4
A
74 75anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
30 35first strand
Strand 2
A
45 54anti-parallel
Strand 3
A
86 94anti-parallel
Strand 4
A
79 80anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
68 69first strand
Strand 2
A
60 65anti-parallel
Strand 3
A
102 107anti-parallel
Strand 4
A
115 118anti-parallel
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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
189 190first strand
Strand 2
A
174 180anti-parallel
Strand 3
A
164 171anti-parallel
Strand 4
A
146 155anti-parallel
Strand 5
A
237 246anti-parallel
Strand 6
A
252 261anti-parallel
Strand 7
A
264 269anti-parallel
Strand 8
A
276 278anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
329 336first strand
Strand 2
A
341 351anti-parallel
Strand 3
A
384 393anti-parallel
Strand 4
A
371 373anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
329 336first strand
Strand 2
A
341 351anti-parallel
Strand 3
A
384 393anti-parallel
Strand 4
A
377 378anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
365 366first strand
Strand 2
A
357 362anti-parallel
Strand 3
A
400 405anti-parallel
Strand 4
A
413 415anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il