Analysis of interatomic Contacts of Structural Units in PDB entry:
6E1J


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6E1J entry

There are 2 chains in PDB entry 6E1J (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 64CYS 472
B
 GLU 65CYS 472
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 46 helices in PDB entry 6E1J. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
100 114Right-handed alpha
Helix 2
AA2
A
123 126Right-handed 310
Helix 3
AA3
A
127 140Right-handed alpha
Helix 4
AA4
A
141 144Right-handed 310
Helix 5
AA5
A
162 174Right-handed alpha
Helix 6
AA6
A
188 195Right-handed alpha
Helix 7
AA7
A
199 218Right-handed alpha
Helix 8
AA8
A
228 232Right-handed 310
Helix 9
AA9
A
233 248Right-handed alpha
Helix 10
AB1
A
262 277Right-handed alpha
Helix 11
AB2
A
279 283Right-handed 310
Helix 12
AB3
A
295 306Right-handed alpha
Helix 13
AB4
A
314 318Right-handed 310
Helix 14
AB5
A
326 342Right-handed alpha
Helix 15
AB6
A
350 352Right-handed 310
Helix 16
AB7
A
353 366Right-handed alpha
Helix 17
AB8
A
385 395Right-handed alpha
Helix 18
AB9
A
396 399Right-handed 310
Helix 19
AC1
A
403 408Right-handed 310
Helix 20
AC2
A
412 417Right-handed 310
Helix 21
AC3
A
424 435Right-handed alpha
Helix 22
AC4
A
440 455Right-handed alpha
Helix 23
AC5
A
462 471Right-handed alpha
Helix 24
AC6
B
90 94Right-handed 310
Helix 25
AC7
B
100 115Right-handed alpha
Helix 26
AC8
B
123 126Right-handed 310
Helix 27
AC9
B
127 140Right-handed alpha
Helix 28
AD1
B
141 144Right-handed 310
Helix 29
AD2
B
162 174Right-handed alpha
Helix 30
AD3
B
188 195Right-handed alpha
Helix 31
AD4
B
199 218Right-handed alpha
Helix 32
AD5
B
228 232Right-handed 310
Helix 33
AD6
B
233 248Right-handed alpha
Helix 34
AD7
B
262 277Right-handed alpha
Helix 35
AD8
B
279 283Right-handed 310
Helix 36
AD9
B
295 306Right-handed alpha
Helix 37
AE1
B
314 318Right-handed 310
Helix 38
AE2
B
326 342Right-handed alpha
Helix 39
AE3
B
350 352Right-handed 310
Helix 40
AE4
B
353 366Right-handed alpha
Helix 41
AE5
B
385 395Right-handed alpha
Helix 42
AE6
B
396 399Right-handed 310
Helix 43
AE7
B
403 408Right-handed 310
Helix 44
AE8
B
424 435Right-handed alpha
Helix 45
AE9
B
440 456Right-handed alpha
Helix 46
AF1
B
462 472Right-handed alpha
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There are 2 sheets in PDB entry 6E1J. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
82 85first strand
Strand 2
A
118 120parallel
Strand 3
A
154 160parallel
Strand 4
A
179 186parallel
Strand 5
A
222 227parallel
Strand 6
A
251 256parallel
Strand 7
A
284 289parallel
Strand 8
A
310 313parallel
Strand 9
A
82 85parallel
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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
82 85first strand
Strand 2
B
118 120parallel
Strand 3
B
154 160parallel
Strand 4
B
179 186parallel
Strand 5
B
222 227parallel
Strand 6
B
251 256parallel
Strand 7
B
284 289parallel
Strand 8
B
310 313parallel
Strand 9
B
82 85parallel
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