Analysis of interatomic Contacts of Structural Units in PDB entry:
6E29

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6E29 entry

There are 4 chains in PDB entry 6E29 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
D	ILE 18	THR 344
A	PRO 15	THR 344
B	ILE 18	THR 344
C	PRO 15	PRO 312

There are 5 helices in PDB entry 6E29. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	D	167	171	Right-handed alpha
Helix 2	AA2	A	159	171	Right-handed alpha
Helix 3	AA3	B	166	171	Right-handed alpha
Helix 4	AA4	B	252	256	Right-handed 310
Helix 5	AA5	C	167	171	Right-handed alpha

There are 28 sheets in PDB entry 6E29. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	19	22	first strand
Strand 2	D	338	342	anti-parallel
Strand 3	D	327	332	anti-parallel
Strand 4	D	316	321	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	27	32	first strand
Strand 2	D	38	43	anti-parallel
Strand 3	D	47	52	anti-parallel
Strand 4	D	57	63	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	69	74	first strand
Strand 2	D	80	85	anti-parallel
Strand 3	D	89	94	anti-parallel
Strand 4	D	100	105	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	110	116	first strand
Strand 2	D	119	127	anti-parallel
Strand 3	D	130	136	anti-parallel
Strand 4	D	143	146	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	175	180	first strand
Strand 2	D	186	191	anti-parallel
Strand 3	D	195	200	anti-parallel
Strand 4	D	206	211	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	217	222	first strand
Strand 2	D	228	233	anti-parallel
Strand 3	D	238	242	anti-parallel
Strand 4	D	260	264	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	273	278	first strand
Strand 2	D	284	289	anti-parallel
Strand 3	D	295	299	anti-parallel
Strand 4	D	305	309	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	18	22	first strand
Strand 2	A	338	342	anti-parallel
Strand 3	A	327	332	anti-parallel
Strand 4	A	316	321	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	27	32	first strand
Strand 2	A	38	43	anti-parallel
Strand 3	A	47	52	anti-parallel
Strand 4	A	57	63	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	69	74	first strand
Strand 2	A	80	85	anti-parallel
Strand 3	A	89	94	anti-parallel
Strand 4	A	99	105	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	110	116	first strand
Strand 2	A	119	127	anti-parallel
Strand 3	A	133	136	anti-parallel
Strand 4	A	143	146	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	175	180	first strand
Strand 2	A	186	191	anti-parallel
Strand 3	A	195	200	anti-parallel
Strand 4	A	206	211	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	217	222	first strand
Strand 2	A	228	233	anti-parallel
Strand 3	A	238	242	anti-parallel
Strand 4	A	260	264	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	273	278	first strand
Strand 2	A	284	289	anti-parallel
Strand 3	A	295	299	anti-parallel
Strand 4	A	305	309	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	20	22	first strand
Strand 2	B	338	342	anti-parallel
Strand 3	B	327	332	anti-parallel
Strand 4	B	316	321	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	27	32	first strand
Strand 2	B	38	43	anti-parallel
Strand 3	B	48	52	anti-parallel
Strand 4	B	57	62	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	69	74	first strand
Strand 2	B	80	85	anti-parallel
Strand 3	B	89	94	anti-parallel
Strand 4	B	100	105	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	110	116	first strand
Strand 2	B	119	127	anti-parallel
Strand 3	B	130	136	anti-parallel
Strand 4	B	143	146	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	175	180	first strand
Strand 2	B	186	191	anti-parallel
Strand 3	B	195	200	anti-parallel
Strand 4	B	205	211	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	217	222	first strand
Strand 2	B	228	233	anti-parallel
Strand 3	B	238	242	anti-parallel
Strand 4	B	260	264	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	273	278	first strand
Strand 2	B	284	289	anti-parallel
Strand 3	B	295	299	anti-parallel
Strand 4	B	305	309	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	17	22	first strand
Strand 2	C	338	342	anti-parallel
Strand 3	C	327	332	anti-parallel
Strand 4	C	316	321	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	27	32	first strand
Strand 2	C	38	43	anti-parallel
Strand 3	C	48	52	anti-parallel
Strand 4	C	57	62	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	69	74	first strand
Strand 2	C	80	85	anti-parallel
Strand 3	C	89	94	anti-parallel
Strand 4	C	99	105	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	110	116	first strand
Strand 2	C	119	127	anti-parallel
Strand 3	C	130	136	anti-parallel
Strand 4	C	143	146	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	175	180	first strand
Strand 2	C	186	191	anti-parallel
Strand 3	C	195	200	anti-parallel
Strand 4	C	206	211	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	217	222	first strand
Strand 2	C	228	233	anti-parallel
Strand 3	C	238	242	anti-parallel
Strand 4	C	260	264	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	273	278	first strand
Strand 2	C	284	289	anti-parallel
Strand 3	C	295	299	anti-parallel
Strand 4	C	305	309	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6E29

Analysis of interatomic Contacts of Structural Units in PDB entry:
6E29