Analysis of interatomic Contacts of Structural Units in PDB entry:
6E2M


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6E2M entry


Note, this PDB entry contains modified residue(s) PHOSPHOTHREONINE (TPO) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 3 chains in PDB entry 6E2M (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
LEU 670GLU 837
A
PHE 839LYS 939
B
LEU 671VAL 940
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 23 helices in PDB entry 6E2M. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
719 730Right-handed alpha
Helix 2
AA2
A
761 769Right-handed alpha
Helix 3
AA3
A
776 797Right-handed alpha
Helix 4
AA4
A
805 807Right-handed 310
Helix 5
AA5
A
842 846Right-handed 310
Helix 6
AA6
A
847 852Right-handed alpha
Helix 7
AA7
A
860 877Right-handed alpha
Helix 8
AA8
A
881 885Right-handed 310
Helix 9
AA9
A
886 898Right-handed alpha
Helix 10
AB1
A
908 919Right-handed alpha
Helix 11
AB2
A
928 934Right-handed alpha
Helix 12
AB3
A
935 939Right-handed 310
Helix 13
AB4
B
721 730Right-handed alpha
Helix 14
AB5
B
761 769Right-handed alpha
Helix 15
AB6
B
776 797Right-handed alpha
Helix 16
AB7
B
842 846Right-handed 310
Helix 17
AB8
B
847 853Right-handed alpha
Helix 18
AB9
B
860 877Right-handed alpha
Helix 19
AC1
B
881 885Right-handed 310
Helix 20
AC2
B
886 898Right-handed alpha
Helix 21
AC3
B
908 919Right-handed alpha
Helix 22
AC4
B
928 934Right-handed alpha
Helix 23
AC5
B
935 939Right-handed 310
Back to top of page

There are 8 sheets in PDB entry 6E2M. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
673 675first strand
Strand 2
A
693 699anti-parallel
Strand 3
A
685 688anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
673 675first strand
Strand 2
A
693 699anti-parallel
Strand 3
A
705 711anti-parallel
Strand 4
A
750 755anti-parallel
Strand 5
A
740 745anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
799 800first strand
Strand 2
A
827 828anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
809 811first strand
Strand 2
A
818 820anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
673 675first strand
Strand 2
B
693 699anti-parallel
Strand 3
B
685 688anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
673 675first strand
Strand 2
B
693 699anti-parallel
Strand 3
B
705 711anti-parallel
Strand 4
B
749 755anti-parallel
Strand 5
B
740 746anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
799 800first strand
Strand 2
B
827 828anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
809 811first strand
Strand 2
B
818 820anti-parallel
Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il