Analysis of interatomic Contacts of Structural Units in PDB entry:
6E2Q

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6E2Q entry

There are 8 chains in PDB entry 6E2Q (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 35	GLY 515
B	PRO 37	GLY 515
C	SER 35	GLY 515
D	GLY 34	THR 514
M	LYS 279	PRO 322
N	LYS 279	SER 335
O	LYS 279	SER 335
P	ARG 276	PRO 322

There are 76 helices in PDB entry 6E2Q. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	64	76	Right-handed alpha
Helix 2	AA2	A	81	83	Right-handed 310
Helix 3	AA3	A	146	163	Right-handed alpha
Helix 4	AA4	A	171	194	Right-handed alpha
Helix 5	AA5	A	196	204	Right-handed alpha
Helix 6	AA6	A	205	210	Right-handed 310
Helix 7	AA7	A	211	220	Right-handed alpha
Helix 8	AA8	A	222	241	Right-handed alpha
Helix 9	AA9	A	246	262	Right-handed alpha
Helix 10	AB1	A	263	267	Right-handed 310
Helix 11	AB2	A	310	314	Right-handed 310
Helix 12	AB3	A	319	321	Right-handed 310
Helix 13	AB4	A	358	377	Right-handed alpha
Helix 14	AB5	A	384	388	Right-handed 310
Helix 15	AB6	A	389	399	Right-handed alpha
Helix 16	AB7	A	405	416	Right-handed alpha
Helix 17	AB8	A	473	482	Right-handed alpha
Helix 18	AB9	B	64	75	Right-handed alpha
Helix 19	AC1	B	81	83	Right-handed 310
Helix 20	AC2	B	146	163	Right-handed alpha
Helix 21	AC3	B	171	194	Right-handed alpha
Helix 22	AC4	B	196	204	Right-handed alpha
Helix 23	AC5	B	205	210	Right-handed 310
Helix 24	AC6	B	211	219	Right-handed alpha
Helix 25	AC7	B	222	240	Right-handed alpha
Helix 26	AC8	B	241	243	Right-handed 310
Helix 27	AC9	B	246	262	Right-handed alpha
Helix 28	AD1	B	263	267	Right-handed 310
Helix 29	AD2	B	310	314	Right-handed 310
Helix 30	AD3	B	319	321	Right-handed 310
Helix 31	AD4	B	358	377	Right-handed alpha
Helix 32	AD5	B	389	398	Right-handed alpha
Helix 33	AD6	B	405	416	Right-handed alpha
Helix 34	AD7	B	473	482	Right-handed alpha
Helix 35	AD8	C	64	75	Right-handed alpha
Helix 36	AD9	C	78	83	Right-handed 310
Helix 37	AE1	C	146	163	Right-handed alpha
Helix 38	AE2	C	171	193	Right-handed alpha
Helix 39	AE3	C	196	204	Right-handed alpha
Helix 40	AE4	C	205	210	Right-handed 310
Helix 41	AE5	C	211	221	Right-handed alpha
Helix 42	AE6	C	222	238	Right-handed alpha
Helix 43	AE7	C	239	243	Right-handed 310
Helix 44	AE8	C	246	262	Right-handed alpha
Helix 45	AE9	C	263	267	Right-handed 310
Helix 46	AF1	C	310	314	Right-handed 310
Helix 47	AF2	C	319	321	Right-handed 310
Helix 48	AF3	C	358	377	Right-handed alpha
Helix 49	AF4	C	384	388	Right-handed 310
Helix 50	AF5	C	389	398	Right-handed alpha
Helix 51	AF6	C	405	417	Right-handed alpha
Helix 52	AF7	C	473	483	Right-handed alpha
Helix 53	AF8	D	64	76	Right-handed alpha
Helix 54	AF9	D	78	83	Right-handed 310
Helix 55	AG1	D	146	163	Right-handed alpha
Helix 56	AG2	D	171	193	Right-handed alpha
Helix 57	AG3	D	196	204	Right-handed alpha
Helix 58	AG4	D	205	210	Right-handed 310
Helix 59	AG5	D	211	221	Right-handed alpha
Helix 60	AG6	D	222	238	Right-handed alpha
Helix 61	AG7	D	239	243	Right-handed 310
Helix 62	AG8	D	246	262	Right-handed alpha
Helix 63	AG9	D	263	265	Right-handed 310
Helix 64	AH1	D	310	314	Right-handed 310
Helix 65	AH2	D	358	377	Right-handed alpha
Helix 66	AH3	D	389	398	Right-handed alpha
Helix 67	AH4	D	405	415	Right-handed alpha
Helix 68	AH5	D	473	481	Right-handed alpha
Helix 69	AH6	M	288	294	Right-handed 310
Helix 70	AH7	M	303	312	Right-handed alpha
Helix 71	AH8	N	288	294	Right-handed 310
Helix 72	AH9	N	303	313	Right-handed alpha
Helix 73	AI1	O	288	294	Right-handed 310
Helix 74	AI2	O	303	313	Right-handed alpha
Helix 75	AI3	P	288	294	Right-handed 310
Helix 76	AI4	P	303	312	Right-handed alpha

There are 27 sheets in PDB entry 6E2Q. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	53	55	first strand
Strand 2	A	38	43	anti-parallel
Strand 3	A	109	116	parallel
Strand 4	A	85	89	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	60	63	first strand
Strand 2	A	101	104	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	141	142	first strand
Strand 2	A	131	134	anti-parallel
Strand 3	A	511	513	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	268	273	first strand
Strand 2	A	285	291	anti-parallel
Strand 3	A	295	300	anti-parallel
Strand 4	A	315	318	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	323	330	first strand
Strand 2	A	340	346	anti-parallel
Strand 3	A	352	356	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	462	464	first strand
Strand 2	A	446	456	anti-parallel
Strand 3	A	434	443	anti-parallel
Strand 4	A	422	427	anti-parallel
Strand 5	A	497	498	parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	491	494	first strand
Strand 2	A	485	488	anti-parallel
Strand 3	N	332	333	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	53	57	first strand
Strand 2	B	39	43	anti-parallel
Strand 3	B	110	116	parallel
Strand 4	B	85	89	anti-parallel
Strand 5	B	95	96	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	60	63	first strand
Strand 2	B	101	104	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	141	142	first strand
Strand 2	B	131	134	anti-parallel
Strand 3	B	511	513	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	268	273	first strand
Strand 2	B	285	291	anti-parallel
Strand 3	B	295	300	anti-parallel
Strand 4	B	315	318	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	323	329	first strand
Strand 2	B	340	346	anti-parallel
Strand 3	B	352	356	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	462	464	first strand
Strand 2	B	446	456	anti-parallel
Strand 3	B	434	443	anti-parallel
Strand 4	B	422	427	anti-parallel
Strand 5	B	497	498	parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	491	494	first strand
Strand 2	B	485	488	anti-parallel
Strand 3	O	332	333	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	53	57	first strand
Strand 2	C	38	43	anti-parallel
Strand 3	C	109	116	parallel
Strand 4	C	85	89	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	60	63	first strand
Strand 2	C	101	104	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	141	142	first strand
Strand 2	C	131	134	anti-parallel
Strand 3	C	511	513	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	268	273	first strand
Strand 2	C	285	291	anti-parallel
Strand 3	C	295	300	anti-parallel
Strand 4	C	315	318	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	323	330	first strand
Strand 2	C	340	346	anti-parallel
Strand 3	C	352	356	anti-parallel

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There are 6 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	470	471	first strand
Strand 2	C	462	464	anti-parallel
Strand 3	C	449	456	anti-parallel
Strand 4	C	434	440	anti-parallel
Strand 5	C	422	427	anti-parallel
Strand 6	C	497	498	parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	485	487	first strand
Strand 2	C	492	494	anti-parallel

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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	53	57	first strand
Strand 2	D	39	43	anti-parallel
Strand 3	D	110	116	parallel
Strand 4	D	85	89	anti-parallel
Strand 5	D	95	96	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	60	63	first strand
Strand 2	D	101	104	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	141	142	first strand
Strand 2	D	131	134	anti-parallel
Strand 3	D	511	513	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	267	273	first strand
Strand 2	D	285	291	anti-parallel
Strand 3	D	295	300	anti-parallel
Strand 4	D	315	318	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	323	329	first strand
Strand 2	D	340	346	anti-parallel
Strand 3	D	352	356	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	424	427	first strand
Strand 2	D	434	438	anti-parallel
Strand 3	D	451	456	anti-parallel
Strand 4	D	462	464	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6E2Q

Analysis of interatomic Contacts of Structural Units in PDB entry:
6E2Q