Analysis of interatomic Contacts of Structural Units in PDB entry:
6E36

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6E36 entry

There are 2 chains in PDB entry 6E36 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	TYR 284	PRO 678
B	GLU 285	ALA 677

There are 19 helices in PDB entry 6E36. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	285	329	Right-handed alpha
Helix 2	AA2	A	365	375	Right-handed alpha
Helix 3	AA3	A	378	383	Right-handed alpha
Helix 4	AA4	A	388	392	Right-handed 310
Helix 5	AA5	A	393	398	Right-handed 310
Helix 6	AA6	A	413	417	Right-handed 310
Helix 7	AA7	A	488	491	Right-handed 310
Helix 8	AA8	A	604	609	Right-handed 310
Helix 9	AA9	A	629	631	Right-handed 310
Helix 10	AB1	B	287	329	Right-handed alpha
Helix 11	AB2	B	365	374	Right-handed alpha
Helix 12	AB3	B	375	377	Right-handed 310
Helix 13	AB4	B	378	383	Right-handed alpha
Helix 14	AB5	B	388	392	Right-handed 310
Helix 15	AB6	B	393	398	Right-handed 310
Helix 16	AB7	B	413	417	Right-handed 310
Helix 17	AB8	B	488	491	Right-handed 310
Helix 18	AB9	B	604	609	Right-handed 310
Helix 19	AC1	B	628	632	Right-handed alpha

There are 13 sheets in PDB entry 6E36. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	344	345	first strand
Strand 2	A	453	454	anti-parallel
Strand 3	A	457	468	anti-parallel
Strand 4	A	507	518	anti-parallel
Strand 5	A	619	627	anti-parallel
Strand 6	A	542	547	anti-parallel
Strand 7	A	538	539	anti-parallel

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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	353	357	first strand
Strand 2	A	441	447	anti-parallel
Strand 3	A	457	468	anti-parallel
Strand 4	A	507	518	anti-parallel
Strand 5	A	619	627	anti-parallel
Strand 6	A	542	547	anti-parallel
Strand 7	A	567	570	anti-parallel
Strand 8	A	561	564	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	403	404	first strand
Strand 2	A	362	364	anti-parallel
Strand 3	A	430	437	anti-parallel
Strand 4	A	410	411	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	403	404	first strand
Strand 2	A	362	364	anti-parallel
Strand 3	A	430	437	anti-parallel
Strand 4	A	480	486	anti-parallel
Strand 5	A	493	496	anti-parallel
Strand 6	A	647	650	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	386	387	first strand
Strand 2	A	420	421	parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	526	533	first strand
Strand 2	A	610	616	anti-parallel
Strand 3	A	552	554	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	344	345	first strand
Strand 2	B	453	454	anti-parallel
Strand 3	B	457	458	anti-parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	353	357	first strand
Strand 2	B	441	447	anti-parallel
Strand 3	B	461	468	anti-parallel
Strand 4	B	507	517	anti-parallel
Strand 5	B	619	627	anti-parallel
Strand 6	B	542	547	anti-parallel
Strand 7	B	538	539	anti-parallel

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There are 8 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	353	357	first strand
Strand 2	B	441	447	anti-parallel
Strand 3	B	461	468	anti-parallel
Strand 4	B	507	517	anti-parallel
Strand 5	B	619	627	anti-parallel
Strand 6	B	542	547	anti-parallel
Strand 7	B	567	570	anti-parallel
Strand 8	B	561	564	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	403	404	first strand
Strand 2	B	362	364	anti-parallel
Strand 3	B	430	437	anti-parallel
Strand 4	B	410	411	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	403	404	first strand
Strand 2	B	362	364	anti-parallel
Strand 3	B	430	437	anti-parallel
Strand 4	B	480	486	anti-parallel
Strand 5	B	493	496	anti-parallel
Strand 6	B	647	650	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	386	387	first strand
Strand 2	B	420	421	parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	552	554	first strand
Strand 2	B	610	616	anti-parallel
Strand 3	B	526	533	anti-parallel
Strand 4	B	652	653	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6E36

Analysis of interatomic Contacts of Structural Units in PDB entry:
6E36