Analysis of interatomic Contacts of Structural Units in PDB entry:
6E3D


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6E3D entry

There are 2 chains in PDB entry 6E3D (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 32ALA 541
B
 SER 3THR 6
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 6E3D. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
47 51Right-handed 310
Helix 2
AA2
A
53 64Right-handed alpha
Helix 3
AA3
A
109 122Right-handed alpha
Helix 4
AA4
A
123 126Right-handed 310
Helix 5
AA5
A
129 134Right-handed 310
Helix 6
AA6
A
138 143Right-handed alpha
Helix 7
AA7
A
177 186Right-handed 310
Helix 8
AA8
A
189 195Right-handed alpha
Helix 9
AA9
A
195 202Right-handed alpha
Helix 10
AB1
A
252 262Right-handed alpha
Helix 11
AB2
A
272 276Right-handed 310
Helix 12
AB3
A
278 284Right-handed alpha
Helix 13
AB4
A
308 322Right-handed alpha
Helix 14
AB5
A
324 332Right-handed alpha
Helix 15
AB6
A
357 362Right-handed 310
Helix 16
AB7
A
364 379Right-handed alpha
Helix 17
AB8
A
392 394Right-handed 310
Helix 18
AB9
A
395 411Right-handed alpha
Helix 19
AC1
A
421 431Right-handed alpha
Helix 20
AC2
A
448 452Right-handed 310
Helix 21
AC3
A
453 458Right-handed alpha
Helix 22
AC4
A
470 482Right-handed alpha
Helix 23
AC5
A
485 504Right-handed alpha
Helix 24
AC6
A
534 538Right-handed 310
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There are 7 sheets in PDB entry 6E3D. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
35 39first strand
Strand 2
A
245 249parallel
Strand 3
A
225 230anti-parallel
Strand 4
A
209 211anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
35 39first strand
Strand 2
A
245 249parallel
Strand 3
A
225 230anti-parallel
Strand 4
A
220 221anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
68 70first strand
Strand 2
A
76 78anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
81 85first strand
Strand 2
A
91 96anti-parallel
Strand 3
A
164 168anti-parallel
Strand 4
A
157 161anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
267 268first strand
Strand 2
A
507 518anti-parallel
Strand 3
A
337 339anti-parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
267 268first strand
Strand 2
A
507 518anti-parallel
Strand 3
A
287 299anti-parallel
Strand 4
A
437 440anti-parallel
Strand 5
A
384 390parallel
Strand 6
A
413 419parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
522 523first strand
Strand 2
A
539 540anti-parallel
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