Analysis of interatomic Contacts of Structural Units in PDB entry:
6E3S


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6E3S entry

There are 2 chains in PDB entry 6E3S (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 98VAL 464
B
 SER 28GLU 360
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 6E3S. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
98 116Right-handed alpha
Helix 2
AA2
A
127 142Right-handed alpha
Helix 3
AA3
A
160 171Right-handed alpha
Helix 4
AA4
A
192 198Right-handed alpha
Helix 5
AA5
A
200 205Right-handed alpha
Helix 6
AA6
A
208 213Right-handed alpha
Helix 7
AA7
A
214 216Right-handed 310
Helix 8
AA8
A
217 225Right-handed alpha
Helix 9
AA9
A
378 385Right-handed alpha
Helix 10
AB1
A
387 392Right-handed alpha
Helix 11
AB2
A
395 400Right-handed 310
Helix 12
AB3
A
401 403Right-handed 310
Helix 13
AB4
A
404 418Right-handed alpha
Helix 14
AB5
B
29 41Right-handed alpha
Helix 15
AB6
B
44 50Right-handed alpha
Helix 16
AB7
B
52 74Right-handed alpha
Helix 17
AB8
B
89 95Right-handed alpha
Helix 18
AB9
B
115 120Right-handed alpha
Helix 19
AC1
B
122 127Right-handed alpha
Helix 20
AC2
B
130 135Right-handed 310
Helix 21
AC3
B
136 148Right-handed alpha
Helix 22
AC4
B
184 188Right-handed 310
Helix 23
AC5
B
260 266Right-handed alpha
Helix 24
AC6
B
268 273Right-handed alpha
Helix 25
AC7
B
276 280Right-handed 310
Helix 26
AC8
B
282 284Right-handed 310
Helix 27
AC9
B
285 300Right-handed alpha
Helix 28
AD1
B
355 359Right-handed 310
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There are 5 sheets in PDB entry 6E3S. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
186 189first strand
Strand 2
A
174 180anti-parallel
Strand 3
A
336 342anti-parallel
Strand 4
A
303 313anti-parallel
Strand 5
A
260 268anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
373 376first strand
Strand 2
A
362 367anti-parallel
Strand 3
A
454 463anti-parallel
Strand 4
A
436 447anti-parallel
Strand 5
A
422 430anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
110 111first strand
Strand 2
B
98 103anti-parallel
Strand 3
B
221 228anti-parallel
Strand 4
B
189 200anti-parallel
Strand 5
B
165 174anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
254 257first strand
Strand 2
B
243 248anti-parallel
Strand 3
B
334 343anti-parallel
Strand 4
B
316 327anti-parallel
Strand 5
B
301 303anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
254 257first strand
Strand 2
B
243 248anti-parallel
Strand 3
B
334 343anti-parallel
Strand 4
B
316 327anti-parallel
Strand 5
B
307 310anti-parallel
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