Analysis of interatomic Contacts of Structural Units in PDB entry:
6E4R

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6E4R entry

There are 2 chains in PDB entry 6E4R (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 143	LEU 647
B	GLY 143	LEU 647

There are 49 helices in PDB entry 6E4R. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	147	151	Right-handed 310
Helix 2	AA2	A	160	175	Right-handed alpha
Helix 3	AA3	A	177	184	Right-handed alpha
Helix 4	AA4	A	195	201	Right-handed alpha
Helix 5	AA5	A	221	236	Right-handed alpha
Helix 6	AA6	A	237	239	Right-handed 310
Helix 7	AA7	A	253	256	Right-handed 310
Helix 8	AA8	A	257	264	Right-handed alpha
Helix 9	AA9	A	265	267	Right-handed 310
Helix 10	AB1	A	280	292	Right-handed alpha
Helix 11	AB2	A	310	321	Right-handed alpha
Helix 12	AB3	A	344	347	Right-handed 310
Helix 13	AB4	A	365	370	Right-handed alpha
Helix 14	AB5	A	393	399	Right-handed alpha
Helix 15	AB6	A	411	423	Right-handed alpha
Helix 16	AB7	A	444	449	Right-handed alpha
Helix 17	AB8	A	454	466	Right-handed alpha
Helix 18	AB9	A	469	477	Right-handed alpha
Helix 19	AC1	A	487	497	Right-handed alpha
Helix 20	AC2	A	501	509	Right-handed alpha
Helix 21	AC3	A	515	519	Right-handed 310
Helix 22	AC4	A	555	559	Right-handed 310
Helix 23	AC5	A	591	594	Right-handed 310
Helix 24	AC6	A	632	635	Right-handed 310
Helix 25	AC7	A	643	647	Right-handed 310
Helix 26	AC8	B	147	151	Right-handed 310
Helix 27	AC9	B	160	175	Right-handed alpha
Helix 28	AD1	B	177	184	Right-handed alpha
Helix 29	AD2	B	195	201	Right-handed alpha
Helix 30	AD3	B	221	236	Right-handed alpha
Helix 31	AD4	B	237	239	Right-handed 310
Helix 32	AD5	B	253	256	Right-handed 310
Helix 33	AD6	B	257	265	Right-handed alpha
Helix 34	AD7	B	280	292	Right-handed alpha
Helix 35	AD8	B	310	321	Right-handed alpha
Helix 36	AD9	B	344	347	Right-handed 310
Helix 37	AE1	B	365	370	Right-handed alpha
Helix 38	AE2	B	393	399	Right-handed alpha
Helix 39	AE3	B	411	423	Right-handed alpha
Helix 40	AE4	B	454	466	Right-handed alpha
Helix 41	AE5	B	469	477	Right-handed alpha
Helix 42	AE6	B	487	497	Right-handed alpha
Helix 43	AE7	B	501	509	Right-handed alpha
Helix 44	AE8	B	515	519	Right-handed 310
Helix 45	AE9	B	528	530	Right-handed 310
Helix 46	AF1	B	555	559	Right-handed 310
Helix 47	AF2	B	591	594	Right-handed 310
Helix 48	AF3	B	632	636	Right-handed 310
Helix 49	AF4	B	643	647	Right-handed 310

There are 16 sheets in PDB entry 6E4R. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	270	274	first strand
Strand 2	A	241	248	parallel
Strand 3	A	211	217	parallel
Strand 4	A	296	301	parallel
Strand 5	A	389	392	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	304	306	first strand
Strand 2	A	426	439	anti-parallel
Strand 3	A	324	334	parallel
Strand 4	A	340	341	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	304	306	first strand
Strand 2	A	426	439	anti-parallel
Strand 3	A	379	380	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	349	353	first strand
Strand 2	A	359	363	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	521	523	first strand
Strand 2	A	560	562	anti-parallel
Strand 3	A	568	570	anti-parallel
Strand 4	A	573	577	anti-parallel
Strand 5	A	582	586	anti-parallel
Strand 6	A	544	550	anti-parallel
Strand 7	A	532	536	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	525	527	first strand
Strand 2	A	637	639	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	596	599	first strand
Strand 2	A	604	607	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	613	616	first strand
Strand 2	A	623	626	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	270	274	first strand
Strand 2	B	241	248	parallel
Strand 3	B	211	217	parallel
Strand 4	B	296	301	parallel
Strand 5	B	389	392	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	304	306	first strand
Strand 2	B	426	438	anti-parallel
Strand 3	B	324	333	parallel
Strand 4	B	340	341	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	304	306	first strand
Strand 2	B	426	438	anti-parallel
Strand 3	B	379	380	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	349	353	first strand
Strand 2	B	359	363	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	521	523	first strand
Strand 2	B	560	562	anti-parallel
Strand 3	B	568	570	anti-parallel
Strand 4	B	573	577	anti-parallel
Strand 5	B	582	586	anti-parallel
Strand 6	B	544	545	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	547	550	first strand
Strand 2	B	532	535	anti-parallel
Strand 3	B	525	527	anti-parallel
Strand 4	B	638	639	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	596	599	first strand
Strand 2	B	604	607	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	613	616	first strand
Strand 2	B	623	626	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6E4R

Analysis of interatomic Contacts of Structural Units in PDB entry:
6E4R