Analysis of interatomic Contacts of Structural Units in PDB entry:
6E52


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6E52 entry

There are 2 chains in PDB entry 6E52 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 2ASN 250
B
 GLY 1ASN 250
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 6E52. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
2 67Right-handed alpha
Helix 2
AA2
A
68 74Right-handed alpha
Helix 3
AA3
A
76 88Right-handed alpha
Helix 4
AA4
A
89 103Right-handed alpha
Helix 5
AA5
A
104 106Right-handed 310
Helix 6
AA6
A
110 127Right-handed alpha
Helix 7
AA7
A
145 165Right-handed alpha
Helix 8
AA8
A
213 226Right-handed alpha
Helix 9
AA9
B
2 31Right-handed alpha
Helix 10
AB1
B
33 74Right-handed alpha
Helix 11
AB2
B
76 94Right-handed alpha
Helix 12
AB3
B
95 101Right-handed 310
Helix 13
AB4
B
104 108Right-handed 310
Helix 14
AB5
B
110 127Right-handed alpha
Helix 15
AB6
B
145 164Right-handed alpha
Helix 16
AB7
B
217 226Right-handed alpha
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There are 2 sheets in PDB entry 6E52. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
131 134first strand
Strand 2
A
172 178parallel
Strand 3
A
182 190anti-parallel
Strand 4
A
240 248anti-parallel
Strand 5
A
230 237anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
131 134first strand
Strand 2
B
172 178parallel
Strand 3
B
182 190anti-parallel
Strand 4
B
240 248anti-parallel
Strand 5
B
230 236anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il