Analysis of interatomic Contacts of Structural Units in PDB entry:
6E5U

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6E5U entry

There are 5 chains in PDB entry 6E5U (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 205	ALA 549
B	SER 3	SER 140
C	LYS 205	ALA 549
D	SER 3	SER 140
E	LYS 205	PHE 513

There are 89 helices in PDB entry 6E5U. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	205	219	Right-handed alpha
Helix 2	AA2	A	234	238	Right-handed 310
Helix 3	AA3	A	249	264	Right-handed alpha
Helix 4	AA4	A	283	287	Right-handed 310
Helix 5	AA5	A	305	312	Right-handed 310
Helix 6	AA6	A	325	331	Right-handed 310
Helix 7	AA7	A	333	345	Right-handed alpha
Helix 8	AA8	A	380	399	Right-handed alpha
Helix 9	AA9	A	402	408	Right-handed 310
Helix 10	AB1	A	432	439	Right-handed 310
Helix 11	AB2	A	447	454	Right-handed alpha
Helix 12	AB3	A	458	468	Right-handed alpha
Helix 13	AB4	A	540	546	Right-handed alpha
Helix 14	AB5	B	6	31	Right-handed alpha
Helix 15	AB6	B	32	37	Right-handed 310
Helix 16	AB7	B	54	65	Right-handed alpha
Helix 17	AB8	C	206	219	Right-handed alpha
Helix 18	AB9	C	239	243	Right-handed 310
Helix 19	AC1	C	249	264	Right-handed alpha
Helix 20	AC2	C	283	287	Right-handed 310
Helix 21	AC3	C	305	312	Right-handed 310
Helix 22	AC4	C	325	331	Right-handed 310
Helix 23	AC5	C	333	343	Right-handed alpha
Helix 24	AC6	C	380	399	Right-handed alpha
Helix 25	AC7	C	402	408	Right-handed 310
Helix 26	AC8	C	432	437	Right-handed alpha
Helix 27	AC9	C	447	454	Right-handed alpha
Helix 28	AD1	C	458	468	Right-handed alpha
Helix 29	AD2	C	476	479	Right-handed 310
Helix 30	AD3	C	540	546	Right-handed alpha
Helix 31	AD4	D	6	31	Right-handed alpha
Helix 32	AD5	D	32	37	Right-handed 310
Helix 33	AD6	D	54	65	Right-handed alpha
Helix 34	AD7	E	206	219	Right-handed alpha
Helix 35	AD8	E	237	242	Right-handed alpha
Helix 36	AD9	E	249	264	Right-handed alpha
Helix 37	AE1	E	283	287	Right-handed 310
Helix 38	AE2	E	305	312	Right-handed 310
Helix 39	AE3	E	325	331	Right-handed 310
Helix 40	AE4	E	333	343	Right-handed alpha
Helix 41	AE5	E	380	399	Right-handed alpha
Helix 42	AE6	E	402	408	Right-handed 310
Helix 43	AE7	E	435	439	Right-handed 310
Helix 44	AE8	E	447	454	Right-handed alpha
Helix 45	AE9	E	458	468	Right-handed alpha
Helix 46	AF1	E	540	546	Right-handed alpha
Helix 47	AF2	F	5	31	Right-handed alpha
Helix 48	AF3	F	32	37	Right-handed 310
Helix 49	AF4	F	54	65	Right-handed alpha
Helix 50	AF5	G	206	219	Right-handed alpha
Helix 51	AF6	G	235	240	Right-handed alpha
Helix 52	AF7	G	249	264	Right-handed alpha
Helix 53	AF8	G	283	287	Right-handed 310
Helix 54	AF9	G	305	312	Right-handed 310
Helix 55	AG1	G	325	331	Right-handed 310
Helix 56	AG2	G	333	343	Right-handed alpha
Helix 57	AG3	G	380	399	Right-handed alpha
Helix 58	AG4	G	402	408	Right-handed 310
Helix 59	AG5	G	432	439	Right-handed 310
Helix 60	AG6	G	447	454	Right-handed alpha
Helix 61	AG7	G	458	468	Right-handed alpha
Helix 62	AG8	G	476	479	Right-handed 310
Helix 63	AG9	G	540	546	Right-handed alpha
Helix 64	AH1	H	6	31	Right-handed alpha
Helix 65	AH2	H	32	37	Right-handed 310
Helix 66	AH3	H	54	65	Right-handed alpha
Helix 67	AH4	K	3	26	Right-handed alpha
Helix 68	AH5	K	29	51	Right-handed alpha
Helix 69	AH6	K	53	65	Right-handed alpha
Helix 70	AH7	K	65	70	Right-handed alpha
Helix 71	AH8	L	9	24	Right-handed alpha
Helix 72	AH9	L	29	45	Right-handed alpha
Helix 73	AI1	M	3	25	Right-handed alpha
Helix 74	AI2	M	29	51	Right-handed alpha
Helix 75	AI3	M	53	70	Right-handed alpha
Helix 76	AI4	U	94	99	Right-handed alpha
Helix 77	AI5	U	170	188	Right-handed alpha
Helix 78	AI6	U	197	201	Right-handed 310
Helix 79	AI7	V	94	99	Right-handed alpha
Helix 80	AI8	V	170	188	Right-handed alpha
Helix 81	AI9	V	197	201	Right-handed 310
Helix 82	AJ1	X	94	99	Right-handed alpha
Helix 83	AJ2	X	170	188	Right-handed alpha
Helix 84	AJ3	X	197	201	Right-handed 310
Helix 85	AJ4	Y	94	99	Right-handed alpha
Helix 86	AJ5	Y	170	188	Right-handed alpha
Helix 87	AJ6	Y	197	201	Right-handed 310
Helix 88	AJ7	J	9	24	Right-handed alpha
Helix 89	AJ8	J	30	45	Right-handed alpha

There are 21 sheets in PDB entry 6E5U. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	220	221	first strand
Strand 2	A	226	228	anti-parallel
Strand 3	A	269	271	parallel
Strand 4	A	295	297	parallel
Strand 5	A	319	321	parallel
Strand 6	A	350	351	parallel
Strand 7	A	354	355	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	410	419	first strand
Strand 2	A	526	538	parallel
Strand 3	A	510	522	anti-parallel
Strand 4	A	491	501	anti-parallel
Strand 5	A	472	486	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	50	53	first strand
Strand 2	B	39	47	anti-parallel
Strand 3	B	125	135	parallel
Strand 4	B	104	118	anti-parallel
Strand 5	B	90	101	anti-parallel
Strand 6	B	68	79	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	220	221	first strand
Strand 2	C	226	227	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	295	297	first strand
Strand 2	C	319	321	parallel
Strand 3	C	350	351	parallel
Strand 4	C	354	355	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	410	419	first strand
Strand 2	C	526	538	parallel
Strand 3	C	510	522	anti-parallel
Strand 4	C	491	501	anti-parallel
Strand 5	C	472	474	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	410	419	first strand
Strand 2	C	526	538	parallel
Strand 3	C	510	522	anti-parallel
Strand 4	C	491	501	anti-parallel
Strand 5	C	480	486	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	50	53	first strand
Strand 2	D	39	47	anti-parallel
Strand 3	D	125	135	parallel
Strand 4	D	104	118	anti-parallel
Strand 5	D	89	101	anti-parallel
Strand 6	D	68	79	anti-parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	220	221	first strand
Strand 2	E	226	228	anti-parallel
Strand 3	E	269	271	parallel
Strand 4	E	295	297	parallel
Strand 5	E	319	321	parallel
Strand 6	E	350	351	parallel
Strand 7	E	354	355	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	410	419	first strand
Strand 2	E	526	538	parallel
Strand 3	E	510	522	anti-parallel
Strand 4	E	491	501	anti-parallel
Strand 5	E	472	474	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	410	419	first strand
Strand 2	E	526	538	parallel
Strand 3	E	510	522	anti-parallel
Strand 4	E	491	501	anti-parallel
Strand 5	E	480	486	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	50	53	first strand
Strand 2	F	39	47	anti-parallel
Strand 3	F	125	135	parallel
Strand 4	F	104	118	anti-parallel
Strand 5	F	90	101	anti-parallel
Strand 6	F	68	79	anti-parallel

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There are 7 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	220	221	first strand
Strand 2	G	226	228	anti-parallel
Strand 3	G	269	271	parallel
Strand 4	G	295	297	parallel
Strand 5	G	319	321	parallel
Strand 6	G	350	351	parallel
Strand 7	G	354	355	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	410	419	first strand
Strand 2	G	526	538	parallel
Strand 3	G	510	522	anti-parallel
Strand 4	G	491	501	anti-parallel
Strand 5	G	472	474	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	410	419	first strand
Strand 2	G	526	538	parallel
Strand 3	G	510	522	anti-parallel
Strand 4	G	491	501	anti-parallel
Strand 5	G	480	486	anti-parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	50	53	first strand
Strand 2	H	39	47	anti-parallel
Strand 3	H	125	135	parallel
Strand 4	H	107	118	anti-parallel
Strand 5	H	90	101	anti-parallel
Strand 6	H	68	80	anti-parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	107	111	first strand
Strand 2	U	115	120	anti-parallel
Strand 3	U	159	162	anti-parallel
Strand 4	U	140	150	anti-parallel
Strand 5	U	128	137	anti-parallel
Strand 6	U	192	194	parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	V	107	111	first strand
Strand 2	V	116	120	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	V	156	160	first strand
Strand 2	V	146	150	anti-parallel
Strand 3	V	128	133	anti-parallel
Strand 4	V	192	193	parallel

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There are 6 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	107	111	first strand
Strand 2	X	115	120	anti-parallel
Strand 3	X	159	162	anti-parallel
Strand 4	X	140	150	anti-parallel
Strand 5	X	128	137	anti-parallel
Strand 6	X	192	194	parallel

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There are 6 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	107	111	first strand
Strand 2	Y	115	120	anti-parallel
Strand 3	Y	159	162	anti-parallel
Strand 4	Y	146	150	anti-parallel
Strand 5	Y	128	133	anti-parallel
Strand 6	Y	192	194	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6E5U

Analysis of interatomic Contacts of Structural Units in PDB entry:
6E5U