Analysis of interatomic Contacts of Structural Units in PDB entry:
6E5V

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6E5V entry

There are 2 chains in PDB entry 6E5V (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	HIS 38	ALA 505
B	HIS 38	ALA 505

There are 28 helices in PDB entry 6E5V. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	72	89	Right-handed alpha
Helix 2	AA2	A	108	117	Right-handed alpha
Helix 3	AA3	A	155	167	Right-handed alpha
Helix 4	AA4	A	180	185	Right-handed 310
Helix 5	AA5	A	198	213	Right-handed alpha
Helix 6	AA6	A	225	242	Right-handed alpha
Helix 7	AA7	A	260	270	Right-handed alpha
Helix 8	AA8	A	283	297	Right-handed alpha
Helix 9	AA9	A	338	347	Right-handed alpha
Helix 10	AB1	A	358	368	Right-handed alpha
Helix 11	AB2	A	401	424	Right-handed alpha
Helix 12	AB3	A	431	435	Right-handed 310
Helix 13	AB4	A	438	449	Right-handed alpha
Helix 14	AB5	A	499	502	Right-handed 310
Helix 15	AB6	B	72	89	Right-handed alpha
Helix 16	AB7	B	108	121	Right-handed alpha
Helix 17	AB8	B	155	167	Right-handed alpha
Helix 18	AB9	B	180	185	Right-handed 310
Helix 19	AC1	B	198	214	Right-handed alpha
Helix 20	AC2	B	225	240	Right-handed alpha
Helix 21	AC3	B	260	270	Right-handed alpha
Helix 22	AC4	B	283	297	Right-handed alpha
Helix 23	AC5	B	338	347	Right-handed alpha
Helix 24	AC6	B	358	367	Right-handed alpha
Helix 25	AC7	B	401	424	Right-handed alpha
Helix 26	AC8	B	431	435	Right-handed 310
Helix 27	AC9	B	438	448	Right-handed alpha
Helix 28	AD1	B	499	502	Right-handed 310

There are 8 sheets in PDB entry 6E5V. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	40	42	first strand
Strand 2	A	98	104	anti-parallel
Strand 3	A	46	52	parallel
Strand 4	A	147	151	parallel
Strand 5	A	173	175	parallel
Strand 6	A	192	194	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	55	57	first strand
Strand 2	A	64	67	anti-parallel

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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	246	253	first strand
Strand 2	A	217	223	parallel
Strand 3	A	277	281	parallel
Strand 4	A	304	307	parallel
Strand 5	A	329	333	parallel
Strand 6	A	470	477	anti-parallel
Strand 7	A	484	492	anti-parallel
Strand 8	A	495	497	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	451	453	first strand
Strand 2	A	457	459	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	39	42	first strand
Strand 2	B	98	104	anti-parallel
Strand 3	B	46	52	parallel
Strand 4	B	147	151	parallel
Strand 5	B	173	175	parallel
Strand 6	B	192	194	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	55	57	first strand
Strand 2	B	64	67	anti-parallel

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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	246	253	first strand
Strand 2	B	217	223	parallel
Strand 3	B	277	281	parallel
Strand 4	B	304	307	parallel
Strand 5	B	329	333	parallel
Strand 6	B	471	478	anti-parallel
Strand 7	B	483	491	anti-parallel
Strand 8	B	495	497	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	450	452	first strand
Strand 2	B	458	460	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6E5V

Analysis of interatomic Contacts of Structural Units in PDB entry:
6E5V