Analysis of interatomic Contacts of Structural Units in PDB entry:
6E5Y


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6E5Y entry

There is 1 chain in PDB entry 6E5Y (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 2ASP 442
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 18 helices in PDB entry 6E5Y. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
21 34Right-handed alpha
Helix 2
AA2
A
54 64Right-handed alpha
Helix 3
AA3
A
73 87Right-handed alpha
Helix 4
AA4
A
101 121Right-handed alpha
Helix 5
AA5
A
135 148Right-handed alpha
Helix 6
AA6
A
156 158Right-handed 310
Helix 7
AA7
A
159 166Right-handed alpha
Helix 8
AA8
A
168 179Right-handed alpha
Helix 9
AA9
A
205 209Right-handed 310
Helix 10
AB1
A
213 217Right-handed 310
Helix 11
AB2
A
256 270Right-handed alpha
Helix 12
AB3
A
294 312Right-handed alpha
Helix 13
AB4
A
313 333Right-handed alpha
Helix 14
AB5
A
338 352Right-handed alpha
Helix 15
AB6
A
353 356Right-handed 310
Helix 16
AB7
A
383 388Right-handed 310
Helix 17
AB8
A
398 408Right-handed alpha
Helix 18
AB9
A
409 426Right-handed alpha
Back to top of page

There are 6 sheets in PDB entry 6E5Y. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 5first strand
Strand 2
A
152 154parallel
Strand 3
A
125 127parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
13 17first strand
Strand 2
A
37 44parallel
Strand 3
A
68 72parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
93 94first strand
Strand 2
A
97 98anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
192 196first strand
Strand 2
A
199 203anti-parallel
Strand 3
A
287 293anti-parallel
Strand 4
A
276 281anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
252 253first strand
Strand 2
A
245 249anti-parallel
Strand 3
A
235 242anti-parallel
Strand 4
A
358 364anti-parallel
Strand 5
A
370 376anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
429 430first strand
Strand 2
A
439 440anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il