Analysis of interatomic Contacts of Structural Units in PDB entry:
6E66


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6E66 entry

There are 4 chains in PDB entry 6E66 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 2PRO 189
A
 SER 191ASP 220
A
 ASN 230PHE 282
A
 ASP 284ILE 295
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 6E66. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
29 33Right-handed 310
Helix 2
AA2
A
47 59Right-handed alpha
Helix 3
AA3
A
73 87Right-handed alpha
Helix 4
AA4
A
96 98Right-handed 310
Helix 5
AA5
A
100 104Right-handed 310
Helix 6
AA6
A
106 120Right-handed alpha
Helix 7
AA7
A
121 126Right-handed 310
Helix 8
AA8
A
127 140Right-handed alpha
Helix 9
AA9
A
147 155Right-handed alpha
Helix 10
AB1
A
157 172Right-handed alpha
Helix 11
AB2
A
172 178Right-handed alpha
Helix 12
AB3
A
240 251Right-handed alpha
Helix 13
AB4
A
263 271Right-handed alpha
Helix 14
AB5
A
278 287Right-handed alpha
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There are 4 sheets in PDB entry 6E66. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 5first strand
Strand 2
A
8 9anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
12 15first strand
Strand 2
A
209 212anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
90 94first strand
Strand 2
A
64 69parallel
Strand 3
A
21 26parallel
Strand 4
A
191 196parallel
Strand 5
A
232 237anti-parallel
Strand 6
A
215 218anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
201 202first strand
Strand 2
A
294 295anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il