Analysis of interatomic Contacts of Structural Units in PDB entry:
6E6B

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6E6B entry

There are 2 chains in PDB entry 6E6B (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 2	ASP 634
B	GLN 2	PHE 632

There are 18 helices in PDB entry 6E6B. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	19	25	Right-handed alpha
Helix 2	AA2	A	29	34	Right-handed alpha
Helix 3	AA3	A	61	66	Right-handed alpha
Helix 4	AA4	A	132	135	Right-handed 310
Helix 5	AA5	A	242	246	Right-handed 310
Helix 6	AA6	A	344	348	Right-handed 310
Helix 7	AA7	A	449	453	Right-handed 310
Helix 8	AA8	A	468	472	Right-handed alpha
Helix 9	AA9	A	566	570	Right-handed 310
Helix 10	AB1	B	19	25	Right-handed alpha
Helix 11	AB2	B	29	34	Right-handed alpha
Helix 12	AB3	B	61	66	Right-handed alpha
Helix 13	AB4	B	132	135	Right-handed 310
Helix 14	AB5	B	241	246	Right-handed 310
Helix 15	AB6	B	344	348	Right-handed 310
Helix 16	AB7	B	449	454	Right-handed 310
Helix 17	AB8	B	468	472	Right-handed alpha
Helix 18	AB9	B	566	570	Right-handed 310

There are 30 sheets in PDB entry 6E6B. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	3	8	first strand
Strand 2	A	85	94	parallel
Strand 3	A	73	80	anti-parallel
Strand 4	A	37	39	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	16	18	first strand
Strand 2	A	53	56	anti-parallel
Strand 3	A	45	48	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	107	113	first strand
Strand 2	A	193	203	parallel
Strand 3	A	177	186	anti-parallel
Strand 4	A	137	142	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	121	123	first strand
Strand 2	A	160	166	anti-parallel
Strand 3	A	148	154	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	211	212	first strand
Strand 2	A	236	237	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	216	219	first strand
Strand 2	A	296	304	parallel
Strand 3	A	282	290	anti-parallel
Strand 4	A	248	251	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	230	233	first strand
Strand 2	A	268	271	anti-parallel
Strand 3	A	260	262	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	314	319	first strand
Strand 2	A	333	340	anti-parallel
Strand 3	A	369	374	anti-parallel
Strand 4	A	360	366	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	323	325	first strand
Strand 2	A	401	411	parallel
Strand 3	A	385	394	anti-parallel
Strand 4	A	350	355	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	419	420	first strand
Strand 2	A	444	445	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	424	430	first strand
Strand 2	A	511	521	parallel
Strand 3	A	495	504	anti-parallel
Strand 4	A	455	462	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	438	441	first strand
Strand 2	A	481	484	anti-parallel
Strand 3	A	473	475	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	529	532	first strand
Strand 2	A	560	562	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	540	547	first strand
Strand 2	A	623	633	parallel
Strand 3	A	607	616	anti-parallel
Strand 4	A	572	579	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	555	558	first strand
Strand 2	A	593	596	anti-parallel
Strand 3	A	585	587	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	4	8	first strand
Strand 2	B	85	94	parallel
Strand 3	B	73	80	anti-parallel
Strand 4	B	37	39	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	16	18	first strand
Strand 2	B	53	56	anti-parallel
Strand 3	B	45	48	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	107	113	first strand
Strand 2	B	193	203	parallel
Strand 3	B	177	186	anti-parallel
Strand 4	B	137	142	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	121	123	first strand
Strand 2	B	161	166	anti-parallel
Strand 3	B	148	153	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	211	212	first strand
Strand 2	B	236	237	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	216	222	first strand
Strand 2	B	296	306	parallel
Strand 3	B	282	290	anti-parallel
Strand 4	B	248	251	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	230	233	first strand
Strand 2	B	268	271	anti-parallel
Strand 3	B	260	262	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	314	319	first strand
Strand 2	B	333	340	anti-parallel
Strand 3	B	369	374	anti-parallel
Strand 4	B	360	366	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	323	325	first strand
Strand 2	B	401	411	parallel
Strand 3	B	385	394	anti-parallel
Strand 4	B	350	355	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	419	420	first strand
Strand 2	B	444	445	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	424	430	first strand
Strand 2	B	511	521	parallel
Strand 3	B	495	503	anti-parallel
Strand 4	B	456	462	anti-parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	438	441	first strand
Strand 2	B	481	484	anti-parallel
Strand 3	B	473	475	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	529	532	first strand
Strand 2	B	560	562	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	540	543	first strand
Strand 2	B	623	631	parallel
Strand 3	B	607	616	anti-parallel
Strand 4	B	572	579	anti-parallel

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There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	555	558	first strand
Strand 2	B	593	596	anti-parallel
Strand 3	B	585	587	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6E6B

Analysis of interatomic Contacts of Structural Units in PDB entry:
6E6B