Analysis of interatomic Contacts of Structural Units in PDB entry:
6E6E

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6E6E entry

There are 8 chains in PDB entry 6E6E (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 261	LEU 536
B	ASP 261	LEU 536
C	ASP 261	LEU 536
D	ASP 261	LEU 536
E	ASP 261	LEU 536
F	ASP 261	LEU 536
G	ASP 261	LEU 536
H	ASP 261	LEU 536

There are110 helices in PDB entry 6E6E. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	266	268	Right-handed 310
Helix 2	AA2	A	308	310	Right-handed 310
Helix 3	AA3	A	311	320	Right-handed alpha
Helix 4	AA4	A	349	355	Right-handed alpha
Helix 5	AA5	A	356	360	Right-handed 310
Helix 6	AA6	A	362	383	Right-handed alpha
Helix 7	AA7	A	391	393	Right-handed 310
Helix 8	AA8	A	399	401	Right-handed 310
Helix 9	AA9	A	433	440	Right-handed alpha
Helix 10	AB1	A	443	460	Right-handed alpha
Helix 11	AB2	A	470	480	Right-handed alpha
Helix 12	AB3	A	491	502	Right-handed alpha
Helix 13	AB4	A	505	509	Right-handed 310
Helix 14	AB5	A	511	521	Right-handed alpha
Helix 15	AB6	A	521	526	Right-handed alpha
Helix 16	AB7	B	266	270	Right-handed 310
Helix 17	AB8	B	308	310	Right-handed 310
Helix 18	AB9	B	311	320	Right-handed alpha
Helix 19	AC1	B	349	355	Right-handed alpha
Helix 20	AC2	B	356	359	Right-handed 310
Helix 21	AC3	B	362	383	Right-handed alpha
Helix 22	AC4	B	391	393	Right-handed 310
Helix 23	AC5	B	399	401	Right-handed 310
Helix 24	AC6	B	433	440	Right-handed alpha
Helix 25	AC7	B	443	460	Right-handed alpha
Helix 26	AC8	B	470	480	Right-handed alpha
Helix 27	AC9	B	491	502	Right-handed alpha
Helix 28	AD1	B	505	509	Right-handed 310
Helix 29	AD2	B	511	521	Right-handed alpha
Helix 30	AD3	B	521	526	Right-handed alpha
Helix 31	AD4	C	309	320	Right-handed alpha
Helix 32	AD5	C	349	355	Right-handed alpha
Helix 33	AD6	C	356	360	Right-handed 310
Helix 34	AD7	C	362	383	Right-handed alpha
Helix 35	AD8	C	391	393	Right-handed 310
Helix 36	AD9	C	399	401	Right-handed 310
Helix 37	AE1	C	433	440	Right-handed alpha
Helix 38	AE2	C	443	460	Right-handed alpha
Helix 39	AE3	C	470	481	Right-handed alpha
Helix 40	AE4	C	491	502	Right-handed alpha
Helix 41	AE5	C	505	509	Right-handed 310
Helix 42	AE6	C	511	521	Right-handed alpha
Helix 43	AE7	C	521	526	Right-handed alpha
Helix 44	AE8	D	310	318	Right-handed alpha
Helix 45	AE9	D	349	355	Right-handed alpha
Helix 46	AF1	D	356	361	Right-handed 310
Helix 47	AF2	D	362	383	Right-handed alpha
Helix 48	AF3	D	391	393	Right-handed 310
Helix 49	AF4	D	399	401	Right-handed 310
Helix 50	AF5	D	433	440	Right-handed alpha
Helix 51	AF6	D	443	460	Right-handed alpha
Helix 52	AF7	D	470	481	Right-handed alpha
Helix 53	AF8	D	491	502	Right-handed alpha
Helix 54	AF9	D	505	509	Right-handed 310
Helix 55	AG1	D	511	521	Right-handed alpha
Helix 56	AG2	D	521	526	Right-handed alpha
Helix 57	AG3	E	266	268	Right-handed 310
Helix 58	AG4	E	311	320	Right-handed alpha
Helix 59	AG5	E	348	355	Right-handed alpha
Helix 60	AG6	E	356	361	Right-handed 310
Helix 61	AG7	E	362	383	Right-handed alpha
Helix 62	AG8	E	391	393	Right-handed 310
Helix 63	AG9	E	399	401	Right-handed 310
Helix 64	AH1	E	433	440	Right-handed alpha
Helix 65	AH2	E	443	460	Right-handed alpha
Helix 66	AH3	E	470	481	Right-handed alpha
Helix 67	AH4	E	491	502	Right-handed alpha
Helix 68	AH5	E	505	509	Right-handed 310
Helix 69	AH6	E	511	521	Right-handed alpha
Helix 70	AH7	E	521	526	Right-handed alpha
Helix 71	AH8	F	311	320	Right-handed alpha
Helix 72	AH9	F	349	355	Right-handed alpha
Helix 73	AI1	F	356	360	Right-handed 310
Helix 74	AI2	F	362	383	Right-handed alpha
Helix 75	AI3	F	391	393	Right-handed 310
Helix 76	AI4	F	399	401	Right-handed 310
Helix 77	AI5	F	433	440	Right-handed alpha
Helix 78	AI6	F	443	460	Right-handed alpha
Helix 79	AI7	F	470	480	Right-handed alpha
Helix 80	AI8	F	491	502	Right-handed alpha
Helix 81	AI9	F	505	509	Right-handed 310
Helix 82	AJ1	F	511	521	Right-handed alpha
Helix 83	AJ2	F	521	526	Right-handed alpha
Helix 84	AJ3	G	308	320	Right-handed alpha
Helix 85	AJ4	G	349	355	Right-handed alpha
Helix 86	AJ5	G	357	361	Right-handed 310
Helix 87	AJ6	G	362	383	Right-handed alpha
Helix 88	AJ7	G	391	393	Right-handed 310
Helix 89	AJ8	G	399	401	Right-handed 310
Helix 90	AJ9	G	433	440	Right-handed alpha
Helix 91	AK1	G	443	459	Right-handed alpha
Helix 92	AK2	G	470	480	Right-handed alpha
Helix 93	AK3	G	491	501	Right-handed alpha
Helix 94	AK4	G	505	509	Right-handed 310
Helix 95	AK5	G	511	521	Right-handed alpha
Helix 96	AK6	G	521	526	Right-handed alpha
Helix 97	AK7	H	266	270	Right-handed 310
Helix 98	AK8	H	311	320	Right-handed alpha
Helix 99	AK9	H	349	355	Right-handed alpha
Helix 100	AL1	H	356	361	Right-handed 310
Helix 101	AL2	H	362	383	Right-handed alpha
Helix 102	AL3	H	391	393	Right-handed 310
Helix 103	AL4	H	399	401	Right-handed 310
Helix 104	AL5	H	433	440	Right-handed alpha
Helix 105	AL6	H	443	460	Right-handed alpha
Helix 106	AL7	H	470	480	Right-handed alpha
Helix 107	AL8	H	491	502	Right-handed alpha
Helix 108	AL9	H	505	509	Right-handed 310
Helix 109	AM1	H	511	521	Right-handed alpha
Helix 110	AM2	H	521	526	Right-handed alpha

There are 22 sheets in PDB entry 6E6E. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	270	277	first strand
Strand 2	A	283	289	anti-parallel
Strand 3	A	293	299	anti-parallel
Strand 4	A	338	342	anti-parallel
Strand 5	A	328	332	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	347	348	first strand
Strand 2	A	395	397	anti-parallel
Strand 3	A	403	405	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	385	386	first strand
Strand 2	A	412	413	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	271	277	first strand
Strand 2	B	283	288	anti-parallel
Strand 3	B	294	299	anti-parallel
Strand 4	B	338	342	anti-parallel
Strand 5	B	328	332	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	347	348	first strand
Strand 2	B	395	397	anti-parallel
Strand 3	B	403	405	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	385	386	first strand
Strand 2	B	412	413	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	271	277	first strand
Strand 2	C	284	288	anti-parallel
Strand 3	C	295	299	anti-parallel
Strand 4	C	338	341	anti-parallel
Strand 5	C	328	332	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	347	348	first strand
Strand 2	C	395	397	anti-parallel
Strand 3	C	403	405	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	385	386	first strand
Strand 2	C	412	413	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	270	279	first strand
Strand 2	D	282	289	anti-parallel
Strand 3	D	295	299	anti-parallel
Strand 4	D	338	341	anti-parallel
Strand 5	D	328	332	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	347	348	first strand
Strand 2	D	395	397	anti-parallel
Strand 3	D	403	405	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	385	386	first strand
Strand 2	D	412	413	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	270	277	first strand
Strand 2	E	283	289	anti-parallel
Strand 3	E	294	299	anti-parallel
Strand 4	E	338	342	anti-parallel
Strand 5	E	328	332	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	385	386	first strand
Strand 2	E	412	413	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	395	397	first strand
Strand 2	E	403	405	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	271	279	first strand
Strand 2	F	282	288	anti-parallel
Strand 3	F	294	299	anti-parallel
Strand 4	F	338	342	anti-parallel
Strand 5	F	328	332	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	347	348	first strand
Strand 2	F	395	397	anti-parallel
Strand 3	F	403	405	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	271	278	first strand
Strand 2	G	283	288	anti-parallel
Strand 3	G	295	299	anti-parallel
Strand 4	G	338	342	anti-parallel
Strand 5	G	328	332	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	347	348	first strand
Strand 2	G	395	397	anti-parallel
Strand 3	G	403	405	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	385	386	first strand
Strand 2	G	412	413	anti-parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	271	277	first strand
Strand 2	H	284	288	anti-parallel
Strand 3	H	294	299	anti-parallel
Strand 4	H	338	342	anti-parallel
Strand 5	H	328	332	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	347	348	first strand
Strand 2	H	395	397	anti-parallel
Strand 3	H	403	405	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6E6E

Analysis of interatomic Contacts of Structural Units in PDB entry:
6E6E