Analysis of interatomic Contacts of Structural Units in PDB entry:
6E7B


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6E7B entry

There are 2 chains in PDB entry 6E7B (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 MET 1GLN 426
A
 MET 1VAL 437
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 34 helices in PDB entry 6E7B. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
9 28Right-handed alpha
Helix 2
AA2
B
41 46Right-handed alpha
Helix 3
AA3
B
47 49Right-handed 310
Helix 4
AA4
B
70 79Right-handed alpha
Helix 5
AA5
B
86 88Right-handed 310
Helix 6
AA6
B
100 106Right-handed alpha
Helix 7
AA7
B
106 127Right-handed alpha
Helix 8
AA8
B
142 159Right-handed alpha
Helix 9
AA9
B
180 193Right-handed alpha
Helix 10
AB1
B
204 214Right-handed alpha
Helix 11
AB2
B
221 242Right-handed alpha
Helix 12
AB3
B
249 258Right-handed alpha
Helix 13
AB4
B
285 294Right-handed alpha
Helix 14
AB5
B
322 337Right-handed alpha
Helix 15
AB6
B
373 391Right-handed alpha
Helix 16
AB7
B
395 402Right-handed alpha
Helix 17
AB8
B
405 426Right-handed alpha
Helix 18
AB9
A
10 28Right-handed alpha
Helix 19
AC1
A
47 51Right-handed 310
Helix 20
AC2
A
71 80Right-handed alpha
Helix 21
AC3
A
102 108Right-handed alpha
Helix 22
AC4
A
110 113Right-handed 310
Helix 23
AC5
A
114 129Right-handed alpha
Helix 24
AC6
A
148 161Right-handed alpha
Helix 25
AC7
A
182 197Right-handed alpha
Helix 26
AC8
A
206 216Right-handed alpha
Helix 27
AC9
A
223 244Right-handed alpha
Helix 28
AD1
A
251 260Right-handed alpha
Helix 29
AD2
A
277 284Right-handed alpha
Helix 30
AD3
A
287 296Right-handed alpha
Helix 31
AD4
A
324 338Right-handed alpha
Helix 32
AD5
A
383 402Right-handed alpha
Helix 33
AD6
A
404 410Right-handed alpha
Helix 34
AD7
A
414 437Right-handed alpha
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There are 10 sheets in PDB entry 6E7B. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
3 4first strand
Strand 2
B
130 132parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
51 54first strand
Strand 2
B
58 61anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
65 66first strand
Strand 2
B
90 91parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
134 138first strand
Strand 2
B
165 170parallel
Strand 3
B
202 203parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
199 200first strand
Strand 2
B
265 266parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
349 352first strand
Strand 2
B
310 316parallel
Strand 3
B
367 371anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
65 68first strand
Strand 2
A
5 9parallel
Strand 3
A
134 137parallel
Strand 4
A
165 172parallel
Strand 5
A
200 205parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
53 56first strand
Strand 2
A
60 63anti-parallel
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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
351 354first strand
Strand 2
A
312 321parallel
Strand 3
A
373 377anti-parallel
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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
351 354first strand
Strand 2
A
312 321parallel
Strand 3
A
380 381anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il