Analysis of interatomic Contacts of Structural Units in PDB entry:
6E7F


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6E7F entry

There are 2 chains in PDB entry 6E7F (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS -14ASP 415
B
 HIS -14ASP 415
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 6E7F. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
81 94Right-handed alpha
Helix 2
AA2
A
100 107Right-handed alpha
Helix 3
AA3
A
108 110Right-handed 310
Helix 4
AA4
A
157 168Right-handed alpha
Helix 5
AA5
A
170 175Right-handed alpha
Helix 6
AA6
A
195 200Right-handed alpha
Helix 7
AA7
A
206 213Right-handed alpha
Helix 8
AA8
A
214 216Right-handed 310
Helix 9
AA9
A
223 242Right-handed alpha
Helix 10
AB1
A
396 414Right-handed alpha
Helix 11
AB2
B
81 95Right-handed alpha
Helix 12
AB3
B
100 110Right-handed alpha
Helix 13
AB4
B
157 168Right-handed alpha
Helix 14
AB5
B
170 175Right-handed alpha
Helix 15
AB6
B
195 201Right-handed alpha
Helix 16
AB7
B
206 213Right-handed alpha
Helix 17
AB8
B
214 216Right-handed 310
Helix 18
AB9
B
223 242Right-handed alpha
Helix 19
AC1
B
396 415Right-handed alpha
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There are 6 sheets in PDB entry 6E7F. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
73 76first strand
Strand 2
A
127 130anti-parallel
Strand 3
A
113 117anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
190 194first strand
Strand 2
A
176 185anti-parallel
Strand 3
A
140 147anti-parallel
Strand 4
A
252 258anti-parallel
Strand 5
A
379 383anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
246 248first strand
Strand 2
A
389 391anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
72 76first strand
Strand 2
B
127 131anti-parallel
Strand 3
B
113 117anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
190 194first strand
Strand 2
B
176 185anti-parallel
Strand 3
B
140 147anti-parallel
Strand 4
B
252 258anti-parallel
Strand 5
B
379 383anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
246 248first strand
Strand 2
B
389 391anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il