Analysis of interatomic Contacts of Structural Units in PDB entry:
6E7K

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6E7K entry

There are 4 chains in PDB entry 6E7K (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 33	LEU 470
B	ARG 32	LEU 470
C	LEU 62	SER 144
D	LEU 62	GLN 142

There are 23 helices in PDB entry 6E7K. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	60	67	Right-handed alpha
Helix 2	AA2	A	90	103	Right-handed alpha
Helix 3	AA3	A	113	118	Right-handed alpha
Helix 4	AA4	A	120	127	Right-handed alpha
Helix 5	AA5	A	127	147	Right-handed alpha
Helix 6	AA6	A	149	151	Right-handed 310
Helix 7	AA7	A	160	170	Right-handed alpha
Helix 8	AA8	A	193	197	Right-handed 310
Helix 9	AA9	A	199	203	Right-handed 310
Helix 10	AB1	A	261	280	Right-handed alpha
Helix 11	AB2	A	293	299	Right-handed alpha
Helix 12	AB3	A	305	308	Right-handed 310
Helix 13	AB4	B	60	67	Right-handed alpha
Helix 14	AB5	B	90	103	Right-handed alpha
Helix 15	AB6	B	115	119	Right-handed 310
Helix 16	AB7	B	120	127	Right-handed alpha
Helix 17	AB8	B	127	147	Right-handed alpha
Helix 18	AB9	B	149	151	Right-handed 310
Helix 19	AC1	B	160	170	Right-handed alpha
Helix 20	AC2	B	193	197	Right-handed 310
Helix 21	AC3	B	199	203	Right-handed 310
Helix 22	AC4	B	261	280	Right-handed alpha
Helix 23	AC5	B	293	299	Right-handed alpha

There are 11 sheets in PDB entry 6E7K. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	40	44	first strand
Strand 2	A	107	112	anti-parallel
Strand 3	A	75	79	parallel
Strand 4	A	153	158	parallel
Strand 5	A	178	182	parallel
Strand 6	A	205	209	parallel
Strand 7	A	230	234	parallel
Strand 8	A	328	330	parallel
Strand 9	A	287	290	anti-parallel
Strand 10	A	310	312	anti-parallel

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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	372	384	first strand
Strand 2	A	356	368	anti-parallel
Strand 3	A	402	410	anti-parallel
Strand 4	A	460	469	anti-parallel
Strand 5	A	440	446	anti-parallel
Strand 6	A	430	435	anti-parallel
Strand 7	A	341	349	anti-parallel
Strand 8	A	387	395	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	425	428	first strand
Strand 2	A	451	454	anti-parallel

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There are 10 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	40	44	first strand
Strand 2	B	107	112	anti-parallel
Strand 3	B	75	79	parallel
Strand 4	B	153	158	parallel
Strand 5	B	178	182	parallel
Strand 6	B	205	209	parallel
Strand 7	B	230	234	parallel
Strand 8	B	328	330	parallel
Strand 9	B	287	290	anti-parallel
Strand 10	B	310	312	anti-parallel

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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	372	379	first strand
Strand 2	B	361	368	anti-parallel
Strand 3	B	402	410	anti-parallel
Strand 4	B	460	469	anti-parallel
Strand 5	B	440	446	anti-parallel
Strand 6	B	430	435	anti-parallel
Strand 7	B	341	349	anti-parallel
Strand 8	B	387	395	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	356	358	first strand
Strand 2	B	382	384	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	427	428	first strand
Strand 2	B	451	452	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	63	66	first strand
Strand 2	C	80	83	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	68	72	first strand
Strand 2	C	102	111	anti-parallel
Strand 3	C	88	97	anti-parallel
Strand 4	C	125	131	anti-parallel
Strand 5	C	117	119	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	64	66	first strand
Strand 2	D	80	82	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	68	72	first strand
Strand 2	D	102	111	anti-parallel
Strand 3	D	88	97	anti-parallel
Strand 4	D	125	131	anti-parallel
Strand 5	D	117	119	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6E7K

Analysis of interatomic Contacts of Structural Units in PDB entry:
6E7K